Protein Info for Xcc-8004.4380.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 218 transmembrane" amino acids 20 to 45 (26 residues), see Phobius details PF02669: KdpC" amino acids 23 to 201 (179 residues), 215.6 bits, see alignment E=2.5e-68 TIGR00681: K+-transporting ATPase, C subunit" amino acids 27 to 202 (176 residues), 165.2 bits, see alignment E=8.4e-53

Best Hits

Swiss-Prot: 100% identical to KDPC_XANCP: Potassium-transporting ATPase KdpC subunit (kdpC) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K01548, K+-transporting ATPase ATPase C chain [EC: 3.6.3.12] (inferred from 100% identity to xca:xccb100_3651)

MetaCyc: 40% identical to K+ transporting P-type ATPase subunit KdpC (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-2 [EC: 7.2.2.6]

Predicted SEED Role

"Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)" in subsystem Potassium homeostasis (EC 3.6.3.12, TC 3.A.3.7.1)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.12

Use Curated BLAST to search for 3.6.3.12 or 7.2.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4UQV0 at UniProt or InterPro

Protein Sequence (218 amino acids)

>Xcc-8004.4380.1 Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) (Xanthomonas campestris pv. campestris strain 8004)
MTTSSKSTTMSTSLPLRDDGAVRASFALALFVLLGLGLGYSLVATGITSALMPDQAHGSL
LRADGRVIGSSLVAQPFADARYFQPRPSAAKYDPTAAAGSNQARSNPELLARIATARAEI
AQRDGIAPDAVPGELLTQSGSGLDPHLSPAGAQVQLRRVAAARGWPEQRVAALLQAATEQ
PQFGLLGQPRINVLALNLALDRAGDGVPGTENGVEQQR