Protein Info for Xcc-8004.4375.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Putative membrane-bound metal-dependent hydrolases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 179 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 31 to 36 (6 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 89 to 116 (28 residues), see Phobius details amino acids 152 to 169 (18 residues), see Phobius details PF04307: YdjM" amino acids 1 to 168 (168 residues), 96.8 bits, see alignment E=5.2e-32

Best Hits

Swiss-Prot: 49% identical to YBCI_ECOLI: Inner membrane protein YbcI (ybcI) from Escherichia coli (strain K12)

KEGG orthology group: K07038, inner membrane protein (inferred from 100% identity to xcb:XC_3525)

Predicted SEED Role

"Putative membrane-bound metal-dependent hydrolases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XAY8 at UniProt or InterPro

Protein Sequence (179 amino acids)

>Xcc-8004.4375.1 Putative membrane-bound metal-dependent hydrolases (Xanthomonas campestris pv. campestris strain 8004)
MPTIMTHAAVPLALWCASERGRISPRLLAAGVVAAMLPDADVAAFALHIPYADAFGHRGA
SHSLLFAMLTAALGAGAHRLLRADALQAAVFLLICTASHPLLDAMTSGGLGVALAWPWSD
ARWFAPWRPIRVSPFAGNFFNTRGLTVLLSELRWVWLPLTVAALGWRCLQRATPQDHAS