Protein Info for Xcc-8004.4303.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: tRNA dihydrouridine synthase B (EC 1.-.-.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 TIGR00737: putative TIM-barrel protein, nifR3 family" amino acids 139 to 454 (316 residues), 398.1 bits, see alignment E=1.4e-123 PF01207: Dus" amino acids 149 to 455 (307 residues), 351.4 bits, see alignment E=2.1e-109

Best Hits

KEGG orthology group: K05540, tRNA-dihydrouridine synthase B [EC: 1.-.-.-] (inferred from 100% identity to xca:xccb100_3590)

Predicted SEED Role

"tRNA dihydrouridine synthase B (EC 1.-.-.-)" (EC 1.-.-.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.-.-.-

Use Curated BLAST to search for 1.-.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (468 amino acids)

>Xcc-8004.4303.1 tRNA dihydrouridine synthase B (EC 1.-.-.-) (Xanthomonas campestris pv. campestris strain 8004)
MMQRRAPVPSSGADAPASSEGRRMEKSLSPRGEKALLSRQWRVCLGAPAPQARAGARSGG
WGEGTTEDSQLHSTVGVRYGQPILPPLSSSTRRTLPITPTSLERLLAIAQAEARKRSYDS
PTPIPDSLPHPSYNARMQIGPYTIAPKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTIS
DPRFWGTRKSLHRMDHAGEPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKK
VCNAWAGSALMRDEDLVARILSAVVRAVDVPVTLKIRTGWDCDHRNGPTIARIAQDCGIA
ALAVHGRTRDQHYTGTAEYATIAQIKAALQIPVIANGDIDSPQKAAQVLRDTGVDAVMIG
RAAQGRPWIFGEVAHYLATGALLPPPSLAFVRDTLLGHLEALHAFYGQPQGVRIARKHLG
WYAKDHPQSADFRAVVNRAETPEAQLALTRDYFDALIAGVPPPLHAAA