Protein Info for Xcc-8004.4301.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Nucleoside permease NupC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 36 to 55 (20 residues), see Phobius details amino acids 93 to 117 (25 residues), see Phobius details amino acids 172 to 195 (24 residues), see Phobius details amino acids 206 to 229 (24 residues), see Phobius details amino acids 266 to 291 (26 residues), see Phobius details amino acids 307 to 326 (20 residues), see Phobius details amino acids 371 to 395 (25 residues), see Phobius details amino acids 407 to 429 (23 residues), see Phobius details PF01773: Nucleos_tra2_N" amino acids 13 to 86 (74 residues), 89.6 bits, see alignment E=2.2e-29 PF07670: Gate" amino acids 97 to 196 (100 residues), 64.6 bits, see alignment E=1.6e-21 PF07662: Nucleos_tra2_C" amino acids 209 to 426 (218 residues), 263.6 bits, see alignment E=2e-82

Best Hits

KEGG orthology group: K03317, concentrative nucleoside transporter, CNT family (inferred from 100% identity to xca:xccb100_3588)

Predicted SEED Role

"Nucleoside permease NupC" in subsystem Deoxyribose and Deoxynucleoside Catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XAU8 at UniProt or InterPro

Protein Sequence (432 amino acids)

>Xcc-8004.4301.1 Nucleoside permease NupC (Xanthomonas campestris pv. campestris strain 8004)
MVEGLGRIGFGLFGLVVLIGITWLFSTNRRAIDWKLVATGLLLQISFAALVLLVPGGRDV
FDSLGKGFVKVLSFVNEGSTFIFGNLMNIDSYGFIFAFQVLPTIIFFSALMGVLYHLGVM
QVIVRAMAWAITKVMRVSGAETTSVCASVFIGQTEAPLTVRPYIPKMTQSELLTMMIGGM
AHIAGGVLAAYVGMLGGSDPAQQAFYAKHLLAASIMAAPATLVVAKLLVPETGTPLTRGT
VKMEVEKTTSNVIDAAAAGAGDGLRLALNIGAMLLAFIALIALINAPLTWLGEITGAAAA
LGRPTNLSTIFGYVLAPVAWVIGTPWADATTVGSLIGQKVVINEFVAYTELSQIVKGQVP
GVRLSEEGRLIATYALCGFANFSSIAIQIGGIGGLAPERRHDLAKFGLRAVLGGSIATFM
TATIAGVLSHFG