Protein Info for Xcc-8004.4148.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Translation elongation factor G

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 705 TIGR00484: translation elongation factor G" amino acids 2 to 704 (703 residues), 1167.5 bits, see alignment E=0 PF00009: GTP_EFTU" amino acids 9 to 288 (280 residues), 211.3 bits, see alignment E=2.4e-66 TIGR00231: small GTP-binding protein domain" amino acids 10 to 186 (177 residues), 109.7 bits, see alignment E=1.2e-35 PF03144: GTP_EFTU_D2" amino acids 329 to 396 (68 residues), 73.9 bits, see alignment E=2.8e-24 PF14492: EFG_III" amino acids 409 to 483 (75 residues), 118.5 bits, see alignment E=2.6e-38 PF03764: EFG_IV" amino acids 484 to 612 (129 residues), 143.5 bits, see alignment E=6.8e-46 PF00679: EFG_C" amino acids 614 to 699 (86 residues), 98.1 bits, see alignment E=6.3e-32

Best Hits

Swiss-Prot: 100% identical to EFG_XANC8: Elongation factor G (fusA) from Xanthomonas campestris pv. campestris (strain 8004)

KEGG orthology group: K02355, elongation factor G (inferred from 100% identity to xca:xccb100_3462)

Predicted SEED Role

"Translation elongation factor G" in subsystem Translation elongation factor G family or Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4URD6 at UniProt or InterPro

Protein Sequence (705 amino acids)

>Xcc-8004.4148.1 Translation elongation factor G (Xanthomonas campestris pv. campestris strain 8004)
VARTTPIERYRNFGIMAHIDAGKTTTSERILFYTGVSHKIGEVHDGAAVMDWMEQEQERG
ITITSAATTAFWTGMDKSMPQHRFNIIDTPGHVDFTIEVERSLRVLDGAVFVLCAVGGVQ
PQSETVWRQANKYSVPRMAFVNKMDRTGANFDKVVEQLKARLGAYAVPMQVPIGAEDGFE
GVVDLLKMKAIHWDTASQGTTFEYRDIPADLVDVATEARSFMVEAAAEASEALMDKYLND
GDLSEDEILSGLRERTLKVEIVPVFCGSAFKNKGVQAMLDGVVHLLPSPADRPPVQGIDE
NEKEDTRDATDTAPFSALAFKIMTDPFVGSLTFFRVYSGTLNSGDQVYNPVKSKKERVGR
ILQMHSNNREEIKEVRAGDIAAAVGLKDVTTGDTLCAQDKIITLERMVFPEPVISMAVEP
KTKSDQEKMGMALGRLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMRREFNVEAN
VGKPQVAYRETIRKSDVKSDYKHAKQSGGKGQYGHVVIELSPMTEEDRKNDSVKDDFLFI
NDITGGIIPKEFIPSVEKGLRETITSGPIAGFPVVGVKVKLVFGSYHDVDSSEMAFKLAA
SMAFKQGFAKASPVLLEPIMKVEIVSPEDYLGDVMGDVSRRRGVLQGQDDSPSGKIINAM
IPLGEMFGYATSLRSMSQGRATFSMEFDHYEEAPANIADAVTKKG