Protein Info for Xcc-8004.3970.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Alpha-2-macroglobulin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1645 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF17970: bMG1" amino acids 73 to 151 (79 residues), 30.9 bits, see alignment 1.1e-10 PF21142: A2M_bMG2" amino acids 159 to 284 (126 residues), 145 bits, see alignment 4.4e-46 PF11974: bMG3" amino acids 286 to 380 (95 residues), 91.6 bits, see alignment 1.3e-29 PF01835: MG2" amino acids 385 to 479 (95 residues), 73.1 bits, see alignment 9e-24 PF17972: bMG5" amino acids 492 to 618 (127 residues), 116 bits, see alignment 6.8e-37 PF17962: bMG6" amino acids 624 to 735 (112 residues), 99.8 bits, see alignment 4.9e-32 PF07703: A2M_BRD" amino acids 752 to 893 (142 residues), 72.7 bits, see alignment E=1.8e-23 PF00207: A2M" amino acids 961 to 1046 (86 residues), 30.5 bits, see alignment 1.2e-10 PF17973: bMG10" amino acids 1496 to 1628 (133 residues), 102.9 bits, see alignment E=6.9e-33

Best Hits

Swiss-Prot: 73% identical to A2MG_XYLFA: Alpha-2-macroglobulin (XF_1252) from Xylella fastidiosa (strain 9a5c)

KEGG orthology group: K06894, (no description) (inferred from 100% identity to xcb:XC_3207)

Predicted SEED Role

"Alpha-2-macroglobulin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X9W5 at UniProt or InterPro

Protein Sequence (1645 amino acids)

>Xcc-8004.3970.1 Alpha-2-macroglobulin (Xanthomonas campestris pv. campestris strain 8004)
MDRQESGMTSSGVRRMLLWVVLLTVALGSVACKRNESGQLPTASGEAIKADKQGITGFGL
ARAYPDQTSDGLSLALEFSRPLVGTQDFDALVRFEEKVGNGDSSWSLSDDGKTLRYPYVE
AAKDYTVLIAANLLAADGSRLGKPLKQKVYTGELKPVAGFASQGSVLPARESRGLPVVSV
NVPEVDVEFLRVREKSLPAFFHQFQRGGRRGSWDLENEYSENAPLSKLADPIYVNRFILG
GKQNERVLTYLPTQDIKELQEPGLYFAVMKRAGTFENEFDTAFFTVSDIGLHTRAYKDKL
FVHTASLQSGEPAKNVELRILDAKGELFLKGSTDANGNALLNYTLDASHVLVARSKTDIS
MLPFNQPALDLSEFAVAGREGAWFDVFAWAGRDLYRPGETMRVSAILRDNDGKPTSGPTK
GGQPVFLRLKQPDGKTFRETKLQPGEQGYFEFTQQIPADAPTGRWQVEFRTDPGSKDAVQ
GMTVRVEEFLPERMKLDLDAAQKTLSAGKPFTLIANAAYLYGAPADGNRFTAKLAVSVEQ
HPLESLPGWFFGDPTLELPREAKDVIDTEFGGDGVLREDIALPDEAKPVSTIAAVVSGSV
YETGGRTVTRTIKRVLWPAKALVGVRPLFDDTDGADANSNARFEITRVDAEGKPQPAKGL
KATLVRELRDYHWNYTDDHWDYDFTRRFENKDTRTIDVGSGNAKLDFPVEWGEYRLDVFD
PATGLTTRYPFRAGWSWNDENRGLDARPDKVKLALDKTGYRAGDTLKVTLTPPHAGKGVL
LVESDKLLYVQDIDVKPGSTFEIPVTEAWERHDVYVTALVFRGGSAPSKITPARAVGVAF
VPMDRKARRVAVGLSAPNQMRPEQPLPVTVSVPELAGKAAHVTISAVDVGILNITRFPVP
DANAQFFAQRRLGTDAYDIYGRVIERFEGASGKLKFGGDMALEALPQAKRPTARVQTVDL
FSGSVKLDAKGNARVQLPVPDFNGTLRVSALVYSDTRYGNRDMETIVRAPILAEASMPRV
MAPGDRSTVTLDVQNFTGRPGEFNVRVDGIGPLAIAEAARSVKLATDGKQTLSFPLTATE
GYSVAKVRVRVDGNGFKADRSYDLPVRAGWPQVLRTQTRVLDPLAPVSMDAGLTEGLMAG
SVTARMLVSPLPPIPFASALQDALNYPYGCAEQTTSKGYAALLLDEATARALGTKGLDAA
TRRERMEGAFGRLASMQIASGHFSMWGDDGYVNPGLTPYIAEFLLDAKDAGFAVPDNVLQ
KALNRLSEDLLSGGNEFYGQDRRDNLKFANQAWSGYVLARVNRAPLGTLRALYDNQRDKA
LTGLSLVHLGAALSLQGDTKRGQAAIKAGFAKNSADRPPYFGDYGSAIRDDALMMALLHE
RGLSSPEYDTRAVTLGQALDARRGGGSLWLSTQEQVALARLGKALMVAQGKTVSGTLTVG
GEAQEIAPARLFGRSFDSAALARGVQFVPQGEAPMYASLEVAGIPRSAPEADTRHLSVER
TWYTTDGKPWTPRALKEGEALIVRVTITANTSMRDALLTDLLPAGLEIENFNLGDAKQWA
DVVVDGIGISERSSAADVKHEEFRDDRYVAALSLSSGSKAQVFYLVRAVTPGTYTVPPSL
VEDMYRPDLRGVGRTNPATITVVQP