Protein Info for Xcc-8004.3966.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1032 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR01782: TonB-dependent receptor" amino acids 133 to 1029 (897 residues), 683.5 bits, see alignment E=2.6e-209 PF07715: Plug" amino acids 152 to 270 (119 residues), 55.5 bits, see alignment E=1.1e-18 PF00593: TonB_dep_Rec" amino acids 520 to 996 (477 residues), 105.3 bits, see alignment E=1.1e-33 PF14905: OMP_b-brl_3" amino acids 663 to 941 (279 residues), 47.2 bits, see alignment E=2.7e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_3205)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XA72 at UniProt or InterPro

Protein Sequence (1032 amino acids)

>Xcc-8004.3966.1 hypothetical protein (Xanthomonas campestris pv. campestris strain 8004)
MQRSDSYRVHLSVLALAIAACSSGVQAQALDASNAAGQRSPISPAATPADASGDAGDAET
PAAAANASQTSSEASNQDLPATATATATATSATATATATPATATAIGTGAASDTGTGKVA
SASPSATAGVQTLDAMQVTGVRRANAAAVESKRAATNITDVISATDVRALPDSTIVEALR
RVPGLSVLPATDNEHPRDEAATPVLRGLGPSYNNVTIDGLTIASPGTPNGTLGSITRGVR
LDLLPASMVSELQVVKTFTADLDPNATGGAINLKTRSAFENGGKPFFSAEAALGHANDVG
KPRDQDDPGYRLNATGSRTFGSEQQYGFTLSANYQTLSSYTETHMTTDTVHYGFYDNNGV
LQTGANLGNGWAVPQQDKYWYVQNQRDRYGVTGKFEARPSAAFEAYAMAGYYYFKDDMER
NEVIIDPRNRGQVFNQTATSGSYPGGDIEVGYSNQIVTTRTKVAQLGSIWRPTDRQQFSA
RGSWSDATYDEPIRMIKYATGINRPAAVPVGQTGSGVTVNATPNYAFNYDTSGFDQRFGV
SPQAYNNLDNYSLSYWRPDYKRTAADRILTGRLDYGFNQGESDQGIGFAAGVSYTTDKPS
YDIFRVEYQPNTSAPTFGLADVAGTGRAPMRYAGLNLITIDPDKANRVLAATPLSAFNST
DQQAFSNQDNFTHTEKTFGSYGLVSYRSERLNVQAGLHLDSTKLNTVGRQRQLDTASNRY
VYVDNPTNADYDYLLPSAIMTYHLTGALELRVGASRTLGRPPYDAYAARTSIGFVNTTDA
GNPSAQGVTVTIGNPDIKPRVSNNLDLSLEWRLPGDFDAFASTAVFDKRIQDEIFTLSRT
DSFTFDGTTYANALISTPANAAKARIRGVEFNGIVNTLAPIAPWLSGVGFSANFALLDGS
LDVPYSVGSGSTVSQRERKLDNLVGQPDYTANATLFYNTGGLELRAAYNRQGKALRAIVS
NIDWQDLYWSPRSQLDFTATYAVSKQLSLIGQVSNLTHSRISSVTGPGQNLLKDSYSVPS
TYWVGLRFTPSL