Protein Info for Xcc-8004.3963.1 in Xanthomonas campestris pv. campestris strain 8004
Annotation: Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K05367, penicillin-binding protein 1C [EC: 2.4.1.-] (inferred from 100% identity to xcb:XC_3202)Predicted SEED Role
"Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C" in subsystem Peptidoglycan Biosynthesis (EC 2.4.2.-)
KEGG Metabolic Maps
- Anthocyanin biosynthesis
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of plant hormones
- Carotenoid biosynthesis - General
- Flavone and flavonol biosynthesis
- Flavonoid biosynthesis
- Fructose and mannose metabolism
- Glycerolipid metabolism
- Glycosphingolipid biosynthesis - ganglio series
- Glycosphingolipid biosynthesis - globo series
- Glycosphingolipid biosynthesis - lacto and neolacto series
- Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
- High-mannose type N-glycan biosynthesis
- Keratan sulfate biosynthesis
- Lipopolysaccharide biosynthesis
- N-Glycan biosynthesis
- O-Glycan biosynthesis
- O-Mannosyl glycan biosynthesis
- Peptidoglycan biosynthesis
- Purine metabolism
- Sphingolipid metabolism
- Zeatin biosynthesis
Isozymes
Compare fitness of predicted isozymes for: 2.4.1.-, 2.4.2.-
Use Curated BLAST to search for 2.4.1.- or 2.4.2.-
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0H2X9W1 at UniProt or InterPro
Protein Sequence (807 amino acids)
>Xcc-8004.3963.1 Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C (Xanthomonas campestris pv. campestris strain 8004) MDEQQQAQASTERTQERVAGTDDVAQRGHRRWLTWLRWSAVALLSAVLLLDLAFPLPLPK SRDTSTLVVARDGTPLRAFADAQGVWRYPATPQSVSPLYLQALLNYEDRWFWHHPGVNPW GLLRAGEQWIGSGRIVSGGSTLTMQVARILDPHTRTPWGKAKQLLRALQLEAHLSKQQIL ALYLERAPYGGTIEGVEAASWAYLGKPATALSQAEAALLAVLPQSPSRLRPDSHPEAAQR ARDKVLDRMVELGVWSRAQVDDARFEPVVTRSLKPPLHAALLAQRLHSAQPRAARIVTTL DVELQRTLEERVATYFSQLPERTSAALLVVDNASMEARAYVGSASFGDRKRLGHVDMVQA WRSPGSTLKPFLYGMALDDGVIHSESLLVDAPQSFGNYRPGNFDAAFNGPVAAATALRLS LNVPAVDLLDRIGPARFAARLSNAGIALRFAHGSTPNLALILGGTGAQLQELVGAFAALQ RGGIAGHVRYTPDDPRIDRRLMSPGAAWIVREILQSNPRPGYASGTFDTTARPGVAWKTG TSYGYRDAWAIGGTRRYTVGVWVGRPDGTPLPGQYGAVTALPLMFEVIDALPRAAGDSAP MPMPASVQALEICWPLGTAAAQTPPNLCARRHEAFVLDGAVPPTFAERDARLWQSGQLQY EVDARSGQRLSQECTQPHPRAARSLARWPALVSPWLTAAERAAAQLPPLAADCLPDGRMT GGGVLRIDGLTDRATLARANDTARPVRLQLRALGSEARIDWLLDGRWIAQTAGRQGFQRD FAEVGTHTLTAMASDGAWTQVRFRVLR