Protein Info for Xcc-8004.3895.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1082 TIGR00594: DNA polymerase III, alpha subunit" amino acids 49 to 914 (866 residues), 506.5 bits, see alignment E=8.3e-156 PF02811: PHP" amino acids 50 to 159 (110 residues), 56.4 bits, see alignment E=1.2e-18 PF07733: DNA_pol3_alpha" amino acids 316 to 571 (256 residues), 292.6 bits, see alignment E=7.8e-91 PF17657: DNA_pol3_finger" amino acids 574 to 736 (163 residues), 188.4 bits, see alignment E=1.6e-59 PF14579: HHH_6" amino acids 818 to 914 (97 residues), 73.8 bits, see alignment E=2.6e-24 PF01336: tRNA_anti-codon" amino acids 992 to 1056 (65 residues), 29.9 bits, see alignment 1.1e-10

Best Hits

Swiss-Prot: 100% identical to DNAE2_XANC8: Error-prone DNA polymerase (dnaE2) from Xanthomonas campestris pv. campestris (strain 8004)

KEGG orthology group: K14162, error-prone DNA polymerase [EC: 2.7.7.7] (inferred from 60% identity to pfl:PFL_3697)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4URY1 at UniProt or InterPro

Protein Sequence (1082 amino acids)

>Xcc-8004.3895.1 hypothetical protein (Xanthomonas campestris pv. campestris strain 8004)
MSWDDAIDGVDRDTPGGRMPRGWTVAARLRAANDDITHAAVADTLPAYAELHCLSDFSFL
RGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVQLIVGSEFTLVDGTRF
VLLVENAHGYPQLCSVITTGRRAAGKGAYRLGRAEVEAHFRDVVPGVFALWLPGDQPQAE
QGAWLQRVFAERAFLAVELHREQDDAARLQALQALAQQLGMSALASGDVQMAQRRDRIVQ
DTLTAIRHTLPLADCGAHLFRNGERHLRPRRALGNIYPHALLQASVELAQRCTFDLSKVQ
YTYPRELVPQGHTPASYLRQLTEAGMRERWPEGAPAQVVAQIDSELELIAYKGYEAFFLT
VQDVVRFARAQGILCQGRGSSANSAVCYALGITAVNPSETRLLMARFLSKERDEPPDIDV
DFEHERREEVLQYVYTKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYG
WGNGDTPMEQRIAEAGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSMLVP
VENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYTIATLPG
EDAATYKMIQRADTVGVFQIESRAQMAMLPRLKPREFYDLVIEVAIVRPGPIQGDMVHPY
LRRRQGYEPVSFPSPGVEEILGRTLGIPLFQEQVMELVIHAGYTDSEADQLRRSMAAWRR
GGDMEPHRVRIRELMAGRGYAPEFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKR
HEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERQRVEVLPVDVLHSDWDNILVGGRPW
HSDADPGEQPAIRLGLRQVSGLSEKVVERIVAARAQRPFADIGDLCLRAALDEKARLALA
EAGALQSMVGNRNAARWAMAGVEARRPLLPGSPAERAVELPAPRAGEEILADYRAVGLSL
RQHPMALLRPQMLQRRILGLRELQARRHGSGVHVAGLVTQRQRPATAKGTIFVTLEDEHG
MINVIVWSHLAMRRRRALLESRLLAVRGRWERVDGVEHLIAGDLYDLSDLLGEMQLPSRD
FH