Protein Info for Xcc-8004.3893.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Oligopeptide transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 656 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 38 to 58 (21 residues), see Phobius details amino acids 74 to 95 (22 residues), see Phobius details amino acids 101 to 120 (20 residues), see Phobius details amino acids 155 to 174 (20 residues), see Phobius details amino acids 203 to 231 (29 residues), see Phobius details amino acids 266 to 285 (20 residues), see Phobius details amino acids 319 to 338 (20 residues), see Phobius details amino acids 345 to 370 (26 residues), see Phobius details amino acids 377 to 397 (21 residues), see Phobius details amino acids 407 to 431 (25 residues), see Phobius details amino acids 451 to 473 (23 residues), see Phobius details amino acids 509 to 528 (20 residues), see Phobius details amino acids 542 to 569 (28 residues), see Phobius details amino acids 590 to 614 (25 residues), see Phobius details amino acids 625 to 646 (22 residues), see Phobius details TIGR00728: oligopeptide transporter, OPT superfamily" amino acids 4 to 293 (290 residues), 165.5 bits, see alignment E=2.1e-52 amino acids 315 to 608 (294 residues), 139.4 bits, see alignment E=1.6e-44 PF03169: OPT" amino acids 9 to 611 (603 residues), 433.2 bits, see alignment E=1e-133 TIGR00733: oligopeptide transporter, OPT family" amino acids 10 to 612 (603 residues), 596.6 bits, see alignment E=5.1e-183

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_3146)

Predicted SEED Role

"Oligopeptide transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XA53 at UniProt or InterPro

Protein Sequence (656 amino acids)

>Xcc-8004.3893.1 Oligopeptide transporter (Xanthomonas campestris pv. campestris strain 8004)
MRHDAQPRQLTFRAVVLAIVLAVVLSAANAYLGLFAGLTIATAIPAAVVSMGVLRLLGGG
TILENNIVQTGASAGSSIAAGVIFTIPALVIMGYWPDFKYWWVLGIAGMGGLLGVLFSVP
LRRSMIVEDPLPFPEGKAAAEVLKAGENPGPGLKILAISGAIGALVKLGAASGLRVIPDT
WAQATYLGSSRLVGYLGTNLSPALLGVGYIVGLNVGIVVLSGSILSWHIAIPLYQQFFMG
SDPALAQSLVNAPAADAAFGIWGAKIRYLGVGAMLIGGVWTLFSLRKSLFSGIKSGFAAA
RKSGGGVVAETERDLPMKWMLVALVLCTLPLLGLYQAIVQQWHVSIPMTIIMIVAGFLFV
SVSGYLAGLIGSSNNPVSGITISTILFASAVLVLLLGKSGLVPVGIGAAPLGAVAAIMIG
AVVCCAAAVGGDNLQDLKAGYLVGATPWKQQLMLGIGAFSCALIMAPVLNLLAQAYGIGP
ATPQHPNSLGAPQATLMASVAKGLFGGQLPWSMIAIGAGVGAAIIALDEWLKKTGKRFRV
PVLAAAIGIYLPLELMVPIFLGGLIAHLVERFHTIRADDEDGRDRVHRPGVLFAAGLITG
EALMGIAIAVPIVLSSRADVLALPAALQLNQWVGLAILALVGWLLYRVGKHGERAA