Protein Info for Xcc-8004.3876.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 46 to 65 (20 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 102 to 123 (22 residues), see Phobius details amino acids 135 to 159 (25 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 219 to 240 (22 residues), see Phobius details amino acids 252 to 273 (22 residues), see Phobius details amino acids 285 to 305 (21 residues), see Phobius details amino acids 313 to 335 (23 residues), see Phobius details amino acids 347 to 368 (22 residues), see Phobius details amino acids 374 to 392 (19 residues), see Phobius details TIGR00710: drug resistance transporter, Bcr/CflA subfamily" amino acids 8 to 369 (362 residues), 214.8 bits, see alignment E=1.3e-67 PF07690: MFS_1" amino acids 17 to 352 (336 residues), 163.4 bits, see alignment E=7.2e-52 amino acids 219 to 410 (192 residues), 46.8 bits, see alignment E=2.1e-16 PF00083: Sugar_tr" amino acids 44 to 189 (146 residues), 33 bits, see alignment E=3.3e-12

Best Hits

KEGG orthology group: K07552, MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein (inferred from 100% identity to xca:xccb100_3228)

Predicted SEED Role

"MFS transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X9Q9 at UniProt or InterPro

Protein Sequence (417 amino acids)

>Xcc-8004.3876.1 MFS transporter (Xanthomonas campestris pv. campestris strain 8004)
MTPTTPSTRRMALLLAGLAMFGPFSIDTIFPAFSQLSRSLAVDEVAIQQTISVYLLAYGL
MSIAHGPLSDAWGRKRVILGGLVLFIAGTIGCALSRDLPTLLAFRALQGLSAGVGMIVGR
AVIRDLFQGHDAQRLMSQVSMIFGIAPAIAPIIGGWILLSGAGWPLIFWFLAVFGLVLLI
ATVTWLPETHPVEARTPLQLRRLLHDYVRIGFNPRFQRLAAAGAFNFAGIFLYIASAPVL
VMRHLHLGEGDFAWLFIPTIGGMTLGSFLSGRMAGRMDPVRQVRIGFIYCGVAALVNLGY
TLAVAQISLPWAVLPIFLAGLGMALIFPILALAVLDMYPQQRGLASSLQAFTQLMTNTVV
AGVLSPLLSEHPRHLAFGMTGFFLLGWLFWRWERRSGRRLRRRQAAEALPLEPADHL