Protein Info for Xcc-8004.3862.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Septum site-determining protein MinC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 TIGR01222: septum site-determining protein MinC" amino acids 9 to 245 (237 residues), 233.2 bits, see alignment E=1.6e-73 PF05209: MinC_N" amino acids 10 to 81 (72 residues), 35 bits, see alignment E=1.2e-12 PF03775: MinC_C" amino acids 144 to 242 (99 residues), 108.1 bits, see alignment E=2.1e-35

Best Hits

Swiss-Prot: 100% identical to MINC_XANC8: Probable septum site-determining protein MinC (minC) from Xanthomonas campestris pv. campestris (strain 8004)

KEGG orthology group: K03610, septum site-determining protein MinC (inferred from 100% identity to xcb:XC_3121)

Predicted SEED Role

"Septum site-determining protein MinC" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4US07 at UniProt or InterPro

Protein Sequence (246 amino acids)

>Xcc-8004.3862.1 Septum site-determining protein MinC (Xanthomonas campestris pv. campestris strain 8004)
VNVDFEQAGELKIGQVGIANLRIRTLDVPRLVREMQDRVTRAPKLFGRAAVILDFGGLAQ
APDLATAKALLDGLRSAGVLPVALAYGTSEIDLLSQQLGIPLLAKFRAQYETAAVRPPQP
PPPPHARAEPAAPVARPAPVRMQRNTVRSGQQLYAENCDLTVLSTVGAGAEVIADGSIHI
YGTLRGRALAGAQGNPDARIFCRDFHAELVAIAGHYKVLDDVPMDLRGKAVQVWLEQDQI
KIAALD