Protein Info for Xcc-8004.3824.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Proposed peptidoglycan lipid II flippase MurJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 535 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 53 to 73 (21 residues), see Phobius details amino acids 88 to 113 (26 residues), see Phobius details amino acids 133 to 154 (22 residues), see Phobius details amino acids 161 to 182 (22 residues), see Phobius details amino acids 188 to 211 (24 residues), see Phobius details amino acids 232 to 253 (22 residues), see Phobius details amino acids 277 to 295 (19 residues), see Phobius details amino acids 316 to 339 (24 residues), see Phobius details amino acids 356 to 378 (23 residues), see Phobius details amino acids 390 to 412 (23 residues), see Phobius details amino acids 432 to 455 (24 residues), see Phobius details amino acids 467 to 492 (26 residues), see Phobius details amino acids 504 to 526 (23 residues), see Phobius details TIGR01695: murein biosynthesis integral membrane protein MurJ" amino acids 10 to 520 (511 residues), 393.5 bits, see alignment E=7.7e-122 PF03023: MurJ" amino acids 31 to 488 (458 residues), 403.8 bits, see alignment E=1.3e-124 PF13440: Polysacc_synt_3" amino acids 132 to 340 (209 residues), 36.3 bits, see alignment E=5.8e-13

Best Hits

KEGG orthology group: K03980, virulence factor (inferred from 100% identity to xca:xccb100_3185)

Predicted SEED Role

"Proposed peptidoglycan lipid II flippase MurJ" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X9N0 at UniProt or InterPro

Protein Sequence (535 amino acids)

>Xcc-8004.3824.1 Proposed peptidoglycan lipid II flippase MurJ (Xanthomonas campestris pv. campestris strain 8004)
MSTPRMMRGLLSFSSMTMVSRVLGLIRDQAISTTFGANAVTDAFWVAFRIPNFLRRLFAE
GSFATAFVPVFTEVKETRPHADLRELMARVSGTLGGMLLLVTALGLIFTPQLASVFSDGA
ATDPDKYGLLVDLLRLTFPFLLFVSLTALAGGALNSFQRFAIPALTPVILNLCMIAGALW
LAPRLDVPILALGWAVLVAGALQLLFQLPALKGIDLLTLPRWGWRHPDVRKVLTLMIPTL
FGSSVAQINLMLDTVIAARLSDGSQSWLSLADRFLELPLGVFGVALGTVILPALARHHVK
TDRTAFSGALDWGFRTTLLIAMPAMLGLLLLAEPLVATLFQYRQFTAFDTRMTALSVYGL
SFGLPAYAMLKVVLPAFYARQDTRTPVRAGVAALIANMVFNFAFLAVLYQVMVPPELKEQ
GVMQALGKQPGLHLALGIASALSSYLNLGLLWFWLGKSGVYQRRPGWAGYAARLLVACAA
MVVVLLGLLWWLPSFTDMDKWQRIGWLAVLVGSGGLTYVVAQLALGLRPRHLREQ