Protein Info for Xcc-8004.3816.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 666 transmembrane" amino acids 16 to 36 (21 residues), see Phobius details amino acids 57 to 74 (18 residues), see Phobius details amino acids 103 to 127 (25 residues), see Phobius details amino acids 139 to 162 (24 residues), see Phobius details amino acids 189 to 212 (24 residues), see Phobius details amino acids 230 to 254 (25 residues), see Phobius details amino acids 275 to 298 (24 residues), see Phobius details amino acids 310 to 334 (25 residues), see Phobius details amino acids 346 to 368 (23 residues), see Phobius details amino acids 380 to 403 (24 residues), see Phobius details amino acids 415 to 439 (25 residues), see Phobius details amino acids 455 to 475 (21 residues), see Phobius details amino acids 494 to 517 (24 residues), see Phobius details amino acids 591 to 627 (37 residues), see Phobius details TIGR02843: cytochrome o ubiquinol oxidase, subunit I" amino acids 2 to 647 (646 residues), 1164.4 bits, see alignment E=0 PF00115: COX1" amino acids 56 to 504 (449 residues), 506.5 bits, see alignment E=3.2e-156

Best Hits

Swiss-Prot: 70% identical to CYOB_ECOLI: Cytochrome bo(3) ubiquinol oxidase subunit 1 (cyoB) from Escherichia coli (strain K12)

KEGG orthology group: K02298, cytochrome o ubiquinol oxidase subunit I [EC: 1.10.3.-] (inferred from 100% identity to xca:xccb100_3179)

MetaCyc: 70% identical to cytochrome bo3 subunit 1 (Escherichia coli K-12 substr. MG1655)
RXN-21817 [EC: 7.1.1.3]

Predicted SEED Role

"Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)" in subsystem Terminal cytochrome O ubiquinol oxidase or Terminal cytochrome oxidases (EC 1.10.3.-)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 1.10.3.-

Use Curated BLAST to search for 1.10.3.- or 7.1.1.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XBH3 at UniProt or InterPro

Protein Sequence (666 amino acids)

>Xcc-8004.3816.1 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) (Xanthomonas campestris pv. campestris strain 8004)
MLGKLTIEAVPYHEPIIMIALGGAGLLGLLIAGAITKYKLWGYLWNEWFTSVDHKRIGVM
YIIVALIMLLRGFADAAMMRTQQALAGNGGEGVLPPHHYDQIFTAHGVIMIFFMAMPFMT
GLLNLIVPLQIGARDVAFPFLNSLSFWLFVAGAALINISLGVGEFAQTGWLAYPPLSGLE
YSPGVGVDYYIWALQVSGLGTLLTGVNFFVTIMRMRAPGMTLMRMPIFTWTALITNILII
AAFPILTVALALLGADRYLGTHFFTNDGGGNAMMYVNLIWIWGHPEVYILILPAFGIFSE
LIATYSRKRLFGYTSMVYATACIGVLSFVVWLHHFFTMGSGANVNAFFGITTMIISIPTG
VKIFNWLFTMFRGRVHMTSPVLWTIGFIITFSIGGMTGVMLAIPAVDFVLHNSLFLIAHF
HNVIIGGVVFGYLAGLTYWFPKAFGFKLNERLGKASFWCWIIGFFVAFMPLYVLGFMGMT
RRMNTYNHPEWAPWLYVAAAGAAIIGLGIFLNLVQIAYSVWKRKDNMDHTGDPWDGRTLE
WATSSPPPFYNFAVLPHIDDRDQFWGDKQNGKGWVRPSSYEPIHMPRNTGAGVYIAAFSV
LLGFGLTWHIWWLAIIGLAGMIGSFIARSFDDDIDYWVPAEEVKRIEDARFAKLEQQHAA
QAAKAI