Protein Info for Xcc-8004.3805.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: probable heat shock protein (hsp90 family)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 672 transmembrane" amino acids 163 to 181 (19 residues), see Phobius details PF13589: HATPase_c_3" amino acids 85 to 209 (125 residues), 31 bits, see alignment E=2.3e-11 PF00183: HSP90" amino acids 326 to 405 (80 residues), 32.4 bits, see alignment E=5.1e-12

Best Hits

KEGG orthology group: K04079, molecular chaperone HtpG (inferred from 100% identity to xcb:XC_3075)

Predicted SEED Role

"probable heat shock protein (hsp90 family)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XBH9 at UniProt or InterPro

Protein Sequence (672 amino acids)

>Xcc-8004.3805.1 probable heat shock protein (hsp90 family) (Xanthomonas campestris pv. campestris strain 8004)
LPEKAGLCRRRGAYVRGPWLAAILSGSHCHPGRRVRGWTRPPRTRRPIMQDPINEATDAS
QIRRAGVDLNGLMSVLSKHLYSTPVVALRELVQNAHDSILRRRLEQPEWGGASLIEVHGD
PAQGTVRIIDTGAGLTQQEIHDYLATVGVGYTRGLRQGGHEDSGLIGMFGLGFLSAFVLA
RRVTVRTTSYQTPTLGHCYVSSNAEQYTVSPIAARAQVGTEVVLELHPNYLPLAQEGRLR
EILSQYCALLREPIQIGRDAQPINPEPPPWRMVDAVPLHPVQAWRRQREFAARFERNFEP
LCCMPVRSDEGSDAVGLLWVQDGATYGTSDNRNLSVFLRGMLLHDNARELLPPWAGFIGG
VIESNRLTPTASREDLQRDAVYSAVQHALSEALVQGLAEVARQQPEAWRRILLRHNEALL
GAALCDERLFELLMEHVRVPTSQGDLPAQQLPAHGAVHVILDSDAGFEEMLFRAMGVPVA
YGNRYAVVPFLRRWAQAKGVRLVELGTEQGNRQLFHLDSLPADELAWLEQHLGDGEALVP
ARFSPEELPLVVVPDREAELKRRLEQDENDKRVSTAALRLARQFTARIESQQTQRLYLNL
DTPALQSLLAAYRAGNPQAAVAARLLRSLKVIVAAQGRTQQTPGAAEAEAGVVALNRAFG
DFAAAVTHLLAR