Protein Info for Xcc-8004.371.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 58 to 79 (22 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 115 to 136 (22 residues), see Phobius details amino acids 148 to 168 (21 residues), see Phobius details amino acids 176 to 195 (20 residues), see Phobius details amino acids 221 to 242 (22 residues), see Phobius details amino acids 254 to 276 (23 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 309 to 333 (25 residues), see Phobius details amino acids 345 to 366 (22 residues), see Phobius details amino acids 372 to 392 (21 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 337 (310 residues), 124.1 bits, see alignment E=3.2e-40

Best Hits

Swiss-Prot: 46% identical to OPDE_PSEAE: Transcription regulatory protein OpdE (opdE) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 100% identity to xca:xccb100_0313)

MetaCyc: 40% identical to purine ribonucleoside exporter (Escherichia coli K-12 substr. MG1655)
RXN0-18; RXN0-22

Predicted SEED Role

"transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X321 at UniProt or InterPro

Protein Sequence (398 amino acids)

>Xcc-8004.371.1 transcriptional regulator (Xanthomonas campestris pv. campestris strain 8004)
MSSASTASAAVRAAPSASRQTWSAVGSLSLCVALLIASEFMPVSLLTPIAADLHATAGMA
GQAISISGLFAVLASLLIAPLTSRFNRRHVLISLSAVMLLSLLLIANAHSFGMLMAARAL
LGITIGGFWALATATVMRMMPEEAVPKALGIVYIGNAVATAFAAPLGSYLGAVIGWRGVF
WGMVPLVALTIAWQWHSLPSLPAQGGTSLGSIAALLKRRYVARAMLAIMLGFAGAFSAFT
YFRPFLENAAHVDVSHLSLLLLGLGLAGFAGTYAATALLPKRLFSLLTVLPVALGVATLA
MLLTSHLLWGVAIAMIAWGTLNSALPVAWSTWLSRCIKDAPEAGGGLMVAAIQLAIMLGG
ALGGVLLDHVSIAATFIGASVLLLAASLVAGNGARLQP