Protein Info for Xcc-8004.3657.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: FIG003033: Helicase domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 830 TIGR04121: DEXH box helicase, DNA ligase-associated" amino acids 15 to 825 (811 residues), 1074.4 bits, see alignment E=0 PF00270: DEAD" amino acids 28 to 212 (185 residues), 91.2 bits, see alignment E=1.3e-29 PF00271: Helicase_C" amino acids 264 to 367 (104 residues), 53.5 bits, see alignment E=5.4e-18 PF19306: Lhr_WH" amino acids 411 to 555 (145 residues), 191.3 bits, see alignment E=1.7e-60 PF08494: DEAD_assoc" amino acids 609 to 796 (188 residues), 168.3 bits, see alignment E=3.8e-53

Best Hits

KEGG orthology group: K03724, ATP-dependent helicase Lhr and Lhr-like helicase [EC: 3.6.4.-] (inferred from 100% identity to xcb:XC_2952)

Predicted SEED Role

"FIG003033: Helicase domain protein"

Isozymes

Compare fitness of predicted isozymes for: 3.6.4.-

Use Curated BLAST to search for 3.6.4.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X9N3 at UniProt or InterPro

Protein Sequence (830 amino acids)

>Xcc-8004.3657.1 FIG003033: Helicase domain protein (Xanthomonas campestris pv. campestris strain 8004)
VSPAPPQRGTPLQQWRAWFAQRGWAPLPFQRDVWKRYLDGESGLLHTPTGSGKTLAAFGG
PLLEALAARGRTPPATAVARGRRQPQRSLQVLWITPLRALAADTARALREPVEALGLDWQ
VGLRTGDASARDKRLARSGKLDVLVTTPESLALLLSYPDTAPQLAALRCVIVDEWHELLG
NKRGVLLQLCLARLRSWSPALRIWGLSATLGNLAQARDVLLPHQPDAALVSGVKPRAMTL
ETLLPETGERFPWAGHLGLAQLARVLHKLMEQRTSLVFTNTRAQAELWHQALSAVWPEDA
ATLALHHGSLDPALRTAAEHGLRDGSLRCVVATSSLDLGVDFPAVDQVLQVGSPKGIARL
LQRAGRARHRPGESGHVVCVPSHALELLEYAAARRAIAQGQIETRPPPRLSLDVLAQHCV
TLALGGGFQADALLREVRGTDAFATLDEATWQAVLDFIVQGGSALAHYPDFHKVVRDDAG
IYRVTDRRVALRHRLSIGTITSDGSVRVQFLRGGRLGAVEEQFVGRLKRGDRFQFAGRLL
ELVRLEDMTAYVRIAKGGSGVVPKWMGGRMPLSSALGREVEAVFADPGDAPEMHTLAPLL
QLQSSLSALPGPGHLLVETIKARDGRHLFVYPFAGRQVNEGLAALLAARWGRRQRNTFSF
AANDYGFVLSPAQDVPVDAALLQELLSPARLFEDLRDSLNLGELARRQFREIARVAGLLS
PSLPGRAPRSLRQLQASSGLLYDVLQRFDPEHLLLAQAEREVFEGQLEFARLASALEDCA
ARVLRLCTPRSLTPLSFPLWAERVRGQLSTEDWKARVLRAAAQLERKHGR