Protein Info for Xcc-8004.3571.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: DNA polymerase III alpha subunit (EC 2.7.7.7)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1196 TIGR00594: DNA polymerase III, alpha subunit" amino acids 6 to 1058 (1053 residues), 1151.7 bits, see alignment E=0 PF02811: PHP" amino acids 8 to 184 (177 residues), 93.2 bits, see alignment E=5.7e-30 PF07733: DNA_pol3_alpha" amino acids 304 to 579 (276 residues), 332.3 bits, see alignment E=6.1e-103 PF17657: DNA_pol3_finger" amino acids 582 to 748 (167 residues), 202.8 bits, see alignment E=6e-64 PF14579: HHH_6" amino acids 823 to 913 (91 residues), 98 bits, see alignment 7.2e-32 PF01336: tRNA_anti-codon" amino acids 1029 to 1098 (70 residues), 40.6 bits, see alignment 5.1e-14

Best Hits

Swiss-Prot: 83% identical to DPO3A_XYLFT: DNA polymerase III subunit alpha (dnaE) from Xylella fastidiosa (strain Temecula1 / ATCC 700964)

KEGG orthology group: K02337, DNA polymerase III subunit alpha [EC: 2.7.7.7] (inferred from 100% identity to xcb:XC_2880)

Predicted SEED Role

"DNA polymerase III alpha subunit (EC 2.7.7.7)" in subsystem DNA-replication (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XAZ6 at UniProt or InterPro

Protein Sequence (1196 amino acids)

>Xcc-8004.3571.1 DNA polymerase III alpha subunit (EC 2.7.7.7) (Xanthomonas campestris pv. campestris strain 8004)
MSTSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVMIATPDVTPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAIHPEWLQAGHANLFALAGRDSLAGRLFAEGRADLAEQQLADWQRVFGDGLHL
ELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFAAHEARVCISSGRVLDDP
KRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGTYFLPAYPVPEDET
LDSWIRSQSRDGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVDSVAKLIPNILGIT
LKDAMGEGKDTEMASPELIQRYQVEDDVRDLMDLARQLEDLTRNAGKHAGGVVIAPEPLS
EFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINVRHARA
GIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLLKDARPDRFEDLIALVSLY
RPGPMDLIPDFNARKHGQQDIIYPDPRTEAILKDTYGIMVYQEQVMQMAQIVGDYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLGLTVLPPRVNESAYMFEA
ASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCTRVGTAKLNRRTLEAMINA
GAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPDPSAPAMRLDLPESKEWP
LGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLSALDKILASQQRGGGGGGDGEKRA
WRPEVSAILAGQVVGVRRKGDSQVFVQLEDGRGRVECSAFSDAMAEFGHLLTRDRILIIK
GGLREDEFNGGYSLRIRQCWDYEQICADHTQRLSLRLDLREKQAWSRIDTLLAKHRPGKT
PLRLDLLLRSPAGGVAGMLDLNGSHSVRIDQQLMDSLRADPAVRTLKVKYSPPWAQ