Protein Info for Xcc-8004.3535.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: iron receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 713 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR01783: TonB-dependent siderophore receptor" amino acids 66 to 713 (648 residues), 284.8 bits, see alignment E=8.1e-89 PF07715: Plug" amino acids 66 to 157 (92 residues), 74.1 bits, see alignment E=1.3e-24 PF00593: TonB_dep_Rec" amino acids 242 to 681 (440 residues), 175.3 bits, see alignment E=4.2e-55

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 100% identity to xcb:XC_2846)

Predicted SEED Role

"iron receptor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X9E0 at UniProt or InterPro

Protein Sequence (713 amino acids)

>Xcc-8004.3535.1 iron receptor (Xanthomonas campestris pv. campestris strain 8004)
MRPTLLVTALAVALALPAPSAFAQQTSTSPAVTELDGVNVVGRAQTLYKSEDAAVATRTD
TPLALVPQSVQVLPRELIDDQAARQITDLYRSISGISFFSYAGVTLRGFRQENVLYDGLR
GDPYAGFSVPQLFNIERVEVLKGPAGALYGGGEPGGVINYVTRKPSHQALRRVELQLGNQ
SFGAASFEATGPAREDGRIRYRIGAYADGEDGFRWNTDSESQIGDASVAFDIGETGELTL
QYTDITQNLGGNRLRGVPVDDDGNFLTNRRWNHNESTDFLDMRAKVAFAQYKFAPSSAWD
VDMALRWFKNDEHQIYHEPMGLIDRDGNGIAEWMTRQLRNQYRDNDALSSNVNAVFRTST
GAIGHKLLMGADYYRLDADFRAQTANTADTGRTRGPVPGIDLFNPVYGRSGFYDYGLDTL
PWRATSTRSQRYGAYLQDELTLTERWFAMAGLRWDGFNDDNRLDGSRITGNDLSWRVGST
VVLREGINAYASYASGFLPQDAANQDSSVGGPFDPERSTQWEVGLKTALNDGGLTLNTAL
YRIERSNIVQANGSIVDGVNQLSALGLVRSEGLEVDLLADLTERWVLNLTYAYNDARVLD
AGTNGITNASGDRFANAPRNTFGLWTRYELPAWNSAVAFGADYVGERLSLEGQRVKPYAI
FDISWQTQWDAWKLQVNVKNLFDKVYAASGFTERTGHFPGEPRRIYAQLAYSF