Protein Info for Xcc-8004.3517.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Oligopeptide transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 620 transmembrane" amino acids 132 to 149 (18 residues), see Phobius details amino acids 164 to 183 (20 residues), see Phobius details amino acids 190 to 210 (21 residues), see Phobius details amino acids 216 to 236 (21 residues), see Phobius details amino acids 257 to 277 (21 residues), see Phobius details amino acids 283 to 302 (20 residues), see Phobius details amino acids 339 to 357 (19 residues), see Phobius details amino acids 363 to 382 (20 residues), see Phobius details amino acids 402 to 420 (19 residues), see Phobius details amino acids 447 to 468 (22 residues), see Phobius details amino acids 481 to 502 (22 residues), see Phobius details amino acids 514 to 536 (23 residues), see Phobius details amino acids 547 to 567 (21 residues), see Phobius details amino acids 587 to 608 (22 residues), see Phobius details TIGR00924: amino acid/peptide transporter (Peptide:H+ symporter)" amino acids 115 to 592 (478 residues), 139.9 bits, see alignment E=6.7e-45 PF07690: MFS_1" amino acids 131 to 559 (429 residues), 62 bits, see alignment E=4.8e-21 PF00854: PTR2" amino acids 190 to 312 (123 residues), 123.5 bits, see alignment E=1.1e-39 amino acids 396 to 561 (166 residues), 130.7 bits, see alignment E=7e-42

Best Hits

KEGG orthology group: K03305, proton-dependent oligopeptide transporter, POT family (inferred from 100% identity to xca:xccb100_2892)

Predicted SEED Role

"Oligopeptide transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X992 at UniProt or InterPro

Protein Sequence (620 amino acids)

>Xcc-8004.3517.1 Oligopeptide transporter (Xanthomonas campestris pv. campestris strain 8004)
VVYRHGVQSPNAQWQAATLAGRRPHTGAVRSARNAARPTAAVASPGTPLLPLHRLPRRHT
HASAAACGPFRTSNPVPRDGGQQAAAGTIGLVFCSTGLPLTTSTLPAPAADARLPRQIPF
IIGNEACERFSFYGMRNILVQFLITSLLLQEVGAPERDAEAKHILHSFMIGVFFFPLLGG
WLADRFFGKYTTIIWFSLIYCAGHACLALFEDSRSGFFVGLGLIAFGAGGIKPLVASFMG
DQFDQSNKHRAKVVFDAFYWIINFGSLFASLLIPLALKHLGPSWAFGIPGILMFIATAVF
WLGRKRYVRVPLPPKDPHGFGAVVRSALLAHAPGQGRPGLALAAISVLLALACLGLTEQL
GLVICLCMALVLLLAGIGGGTWWQLERARGTHPDAAVDGVRALLRVLVIFALVTPFFSLF
DQKASTWVLQGREMRMPAWFTASQMQALNPLLVMLLIPFNNLVLYPLLRRLGWEPTSLRR
MTSGIAFSGVAWIAVGAIQVAMDGGEPMHIAWQILPYALLTFGEVLVSATGIEFAYSQAP
PSMKGVVMSFWYLTTTVGNLWVLLSNVAVRNATVTSHIADTGLSEAAFLMFFFAAFAFLA
ALAFGLYARRYRMVDNYRPA