Protein Info for Xcc-8004.3516.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: GlpG protein (membrane protein of glp regulon)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 43 to 67 (25 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 109 to 128 (20 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details amino acids 167 to 184 (18 residues), see Phobius details PF01694: Rhomboid" amino acids 35 to 184 (150 residues), 93.3 bits, see alignment E=7.8e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcc:XCC1407)

Predicted SEED Role

"GlpG protein (membrane protein of glp regulon)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XAW6 at UniProt or InterPro

Protein Sequence (202 amino acids)

>Xcc-8004.3516.1 GlpG protein (membrane protein of glp regulon) (Xanthomonas campestris pv. campestris strain 8004)
MITLILIAITGIVSWMAFNNRKLADRLVLWPPALDKHKQYDRLITYGFIHADLGHLVFNM
ITLFFFGRYIEDVMTRLTGSVLTYPLFYLGALIVSILPSYLKNQKNPNYLSLGASGAVSA
VLFAFILLKPWTIILVLFIPAPAIIYAVFYVGYSLWMDRRGGDRINHSAHLAGAAFGVMF
MLIMEPRVLQVFLEQLSNPRFG