Protein Info for Xcc-8004.3472.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: sensor histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 181 to 204 (24 residues), see Phobius details PF05227: CHASE3" amino acids 38 to 173 (136 residues), 107.1 bits, see alignment E=1.8e-34 PF13185: GAF_2" amino acids 253 to 385 (133 residues), 38 bits, see alignment E=4.8e-13 PF01590: GAF" amino acids 255 to 384 (130 residues), 23 bits, see alignment E=2.5e-08 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 393 to 557 (165 residues), 181.8 bits, see alignment E=4.2e-58 PF00990: GGDEF" amino acids 398 to 555 (158 residues), 162.1 bits, see alignment E=2.4e-51

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_2793)

Predicted SEED Role

"sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XAR9 at UniProt or InterPro

Protein Sequence (565 amino acids)

>Xcc-8004.3472.1 sensor histidine kinase (Xanthomonas campestris pv. campestris strain 8004)
VLTRKAKRHAAGALMLGGLIFVLIGVGGYITSRQSLTAAAWVSHTQEVIASIDEIQAGLL
SAESSARGFVLTDNEAFLGVHADAIGRLPGRIARLEVLVQDNPLQLRNVAALDKLVDMRL
VQINDLLHSYRATGLDGARASIAKGVFQTSSALRRQVQLMGELERRQLVSRTQANHDSAR
WVLWMTAIGILSGLLVMVLAYRLLSRELARRVRAEEEASTSSTRLAESFSTLERTSAGLE
ALARYSGLLQNCRNAEEALEITARTIAPLVPGVSGAVYLLRASRDRAEQVAAWGTLADGE
RGSIAPEECWALRRDRTHLVEDASVGMVCQHAGVNLPPHASTVCIPLSAQGTQLGMLALR
GDNAQELASLTVAEAAAEQLSLALHNLRLRETLRQQSIRDPLTGLFNRRYLEEALNHELS
RCTRRVQPLSVLMLDVDHFKQFNDLHGHSGGDRVLAAIGELLLAQTRGEDICCRYGGEEL
TIILPEVDLATASAMAEKLRAGIDGLQVMADGVSLPKITASFGVATFPGHAGNAAQLLRK
ADEALYRAKQAGRNQVVSAVTPGSV