Protein Info for Xcc-8004.3463.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: COG0553: Superfamily II DNA/RNA helicases, SNF2 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1065 PF04851: ResIII" amino acids 563 to 745 (183 residues), 32.4 bits, see alignment E=1.3e-11 PF00176: SNF2-rel_dom" amino acids 566 to 866 (301 residues), 192.4 bits, see alignment E=1.5e-60 PF00271: Helicase_C" amino acids 893 to 1006 (114 residues), 59 bits, see alignment E=7.6e-20

Best Hits

Predicted SEED Role

"COG0553: Superfamily II DNA/RNA helicases, SNF2 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X968 at UniProt or InterPro

Protein Sequence (1065 amino acids)

>Xcc-8004.3463.1 COG0553: Superfamily II DNA/RNA helicases, SNF2 family (Xanthomonas campestris pv. campestris strain 8004)
MKLRFWKGESPETIPMDAPEFSAESSGWKGTAQEKSTHPGAIYLLQLADERFALKDGAGY
LIPWEKLYSLLSDSDHVSSLHLLKLPQTSRLRPAIRSHGTPTDTNFRVTLEAWIAESGEE
LLAERLGAVLTMPGQDLLLPQSAFTLLEAMAELAQCGEDWDADRRMLQMGKVQEAARWAG
ATMDRYLEHSPVVVANKLEINLKQHEAAEAQIVEVEPRPIGAPEGWLSQFDRYQSVRGRY
DVTDAEGGMSHVVLSSQVREVGQQIKSMPGRRLAGKQADAFMHNPYAVLGEAAAQVISPE
RFAEAKRTAGIDEWELELQPADVDGSWDAVLVDSVGKSESVFVGSFHASEFDSLLEEASG
SEGLGVARWKKHRVLLSGLTLESLARLRQAHFKEAVGSVIGVETLFDLAHYSDRVVGFDG
KPIIVPKVQGSSPAEDWIKGAGEFVAVDPATGTATEGRLSTNDVQEFGERVDLAEREGHI
NVAVPGIEKEIPTPEARAWMKELTKPAGEKRIESLKNPAPAEKLSLRILHNIEELEYPSE
ETEQARVKDVYEAPAALRPEVALKDHQVEGVAWMQGRMRQRGDGVRGVLLADDMGLGKTL
QALTLMAWYRQTAPAPKPCLIVAPVSLLENWKAEIAKFLDGRQGATLTLYGEHLALHRLS
AREIGPELRELGVKKALNPGFAHGAAFVLTTYETLRDYQLSMAREKWGVLVCDEAQKIKT
PSAMVTRSAKAMQADFKIACTGTPVENSLADLWCLFDFFQPGLLDSLTKFTKVFRQQIEL
RSEGHEQKVEVLREQISPWVLRRMKAEVADLKPKTELPCELAMSAKQRGLYAAAARRFRE
TVDSGEGGDTAALSLLHQLRQICANPLAAADDRSEFLSLDEHLRHSPKLAWLIEKLQEIQ
ATGEKVIVFTEFRDIQRLIQRAIASRLSYQASIVNGSTSVEAGADDSRQIIIDAFQAKPD
FGVIVLSTTAVGFGVNIQAANHVIHFTRPWNPAKEDQATDRAYRIGQEKEVFVYYPTVLG
DGFESFEERVAKRLATKRKLSNDMLAPEQGLTLEEFSDLSLGFSE