Protein Info for Xcc-8004.3435.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: UPF0125 protein yfjF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 98 PF03658: Ub-RnfH" amino acids 1 to 78 (78 residues), 72.6 bits, see alignment E=2.8e-24 PF02597: ThiS" amino acids 16 to 68 (53 residues), 24.2 bits, see alignment E=4.1e-09

Best Hits

Swiss-Prot: 56% identical to Y1376_XYLFT: UPF0125 protein PD_1376 (PD_1376) from Xylella fastidiosa (strain Temecula1 / ATCC 700964)

KEGG orthology group: K09801, hypothetical protein (inferred from 99% identity to xca:xccb100_2805)

Predicted SEED Role

"UPF0125 protein yfjF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X953 at UniProt or InterPro

Protein Sequence (98 amino acids)

>Xcc-8004.3435.1 UPF0125 protein yfjF (Xanthomonas campestris pv. campestris strain 8004)
MRVEVIVAWPDRYSAVQLELAEGATVAEAVAASGFAGDQALVGQAVHGVIATPAQVLRDG
DRVELLRPLLLDPKEARRRRAAPAKQAPGTQKKRNASP