Protein Info for Xcc-8004.3387.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 381 PF00356: LacI" amino acids 37 to 82 (46 residues), 43.2 bits, see alignment 5.4e-15 PF00532: Peripla_BP_1" amino acids 94 to 351 (258 residues), 109.2 bits, see alignment E=5.4e-35 PF13407: Peripla_BP_4" amino acids 96 to 339 (244 residues), 73.4 bits, see alignment E=4.6e-24 PF13377: Peripla_BP_3" amino acids 204 to 362 (159 residues), 110.7 bits, see alignment E=1.7e-35

Best Hits

KEGG orthology group: K02529, LacI family transcriptional regulator (inferred from 100% identity to xca:xccb100_2765)

Predicted SEED Role

"transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XAL1 at UniProt or InterPro

Protein Sequence (381 amino acids)

>Xcc-8004.3387.1 transcriptional regulator (Xanthomonas campestris pv. campestris strain 8004)
VHASSLPLQVCCVTRTTPAPPSPEDDAARSTRRGAVTLRDIANAIGVSRATVSLVLRGSP
LVHASTRARVEAELDRQHYVYNRAAANLRRRTSSSIALVINDLSNPFFAEFAAGVDEALG
AAGYVTLLGSTGESTQRQQAVLSSLMEHTPAGIILSPAEGSQAQALTQALGRQRNVLLFN
REVADAEWDLLALDNEQGAFEACSHLIAQGHRHIVFFGGHAASSSCRQRRAGYARAMAAA
GLAVQWVESAPNRQDAAVCATQMLAHPDRTASAAVCYNDSVALGLMAALAMRGIVPGRDF
AVTGFDDIAEAGLFTPALTTLAADPRARGQQAAQLMLQRIEDPDHAPQRLTAAVALKIRA
SSACAPSPAVSTHPPTKAPGR