Protein Info for Xcc-8004.3379.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Transcriptional regulator, ArsR family / Methyltransferase fusion

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 331 PF12840: HTH_20" amino acids 14 to 61 (48 residues), 32.9 bits, see alignment 3e-11 PF01022: HTH_5" amino acids 15 to 60 (46 residues), 55.5 bits, see alignment 2.5e-18 PF13412: HTH_24" amino acids 17 to 60 (44 residues), 22.7 bits, see alignment 3.4e-08 PF12802: MarR_2" amino acids 19 to 62 (44 residues), 30.8 bits, see alignment 1.6e-10 PF01209: Ubie_methyltran" amino acids 133 to 262 (130 residues), 37.7 bits, see alignment E=8.8e-13 PF13489: Methyltransf_23" amino acids 136 to 284 (149 residues), 52.2 bits, see alignment E=3.6e-17 PF05175: MTS" amino acids 143 to 256 (114 residues), 27.1 bits, see alignment E=1.9e-09 PF07021: MetW" amino acids 150 to 238 (89 residues), 23.7 bits, see alignment E=2.1e-08 PF13847: Methyltransf_31" amino acids 150 to 251 (102 residues), 60.2 bits, see alignment E=1.1e-19 PF13649: Methyltransf_25" amino acids 151 to 242 (92 residues), 74 bits, see alignment E=7.9e-24 PF08241: Methyltransf_11" amino acids 152 to 245 (94 residues), 84 bits, see alignment E=5.8e-27 PF08242: Methyltransf_12" amino acids 152 to 244 (93 residues), 55.3 bits, see alignment E=5.5e-18

Best Hits

KEGG orthology group: K03892, ArsR family transcriptional regulator (inferred from 100% identity to xca:xccb100_2759)

Predicted SEED Role

"Transcriptional regulator, ArsR family / Methyltransferase fusion"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X8Y3 at UniProt or InterPro

Protein Sequence (331 amino acids)

>Xcc-8004.3379.1 Transcriptional regulator, ArsR family / Methyltransferase fusion (Xanthomonas campestris pv. campestris strain 8004)
MDLEDWSARLKVFADATRVRLLALLEQEELTVAELSAITRLAQPRVSTHLAKLKEAGLVR
DRRAGVSAYYRFDEVSLDPAQRALWLALSTGSDDPLLRQDAERVAAVLANRAADQNWADS
VAGDMERHYSPGRTWEALARTALPLLETGDVLDIASGDGVLAELVAPHATRYICIDTSAR
VVAAASERLRKLRNVEVREGDMHALPFPDASFDLVVLMHALTYAAKPAQAVAESARVLRP
GGRLLLCSLAKHEHRAAVQAYGHVNLGFAAKELRKFVEKAGLDVSNLESVTREKRPPHFE
VISLIAMKPGIGNRESGLVEGKSNASRRANA