Protein Info for Xcc-8004.3215.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: RhsD protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1465 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 32 to 51 (20 residues), see Phobius details PF20148: DUF6531" amino acids 284 to 352 (69 residues), 34.1 bits, see alignment 2.9e-12 PF05593: RHS_repeat" amino acids 729 to 758 (30 residues), 42.8 bits, see alignment (E = 5.4e-15) amino acids 779 to 815 (37 residues), 24.1 bits, see alignment (E = 3.7e-09) amino acids 868 to 904 (37 residues), 33.7 bits, see alignment (E = 3.8e-12) amino acids 955 to 989 (35 residues), 33.1 bits, see alignment (E = 5.9e-12) amino acids 1030 to 1069 (40 residues), 23.8 bits, see alignment (E = 4.7e-09) TIGR01643: YD repeat (two copies)" amino acids 729 to 758 (30 residues), 26 bits, see alignment (E = 9.3e-10) amino acids 847 to 888 (42 residues), 27.5 bits, see alignment (E = 3.2e-10) amino acids 955 to 985 (31 residues), 21.7 bits, see alignment (E = 2.2e-08) TIGR03696: RHS repeat-associated core domain" amino acids 1357 to 1437 (81 residues), 60.1 bits, see alignment 2.3e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_2592)

Predicted SEED Role

"RhsD protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X8L8 at UniProt or InterPro

Protein Sequence (1465 amino acids)

>Xcc-8004.3215.1 RhsD protein (Xanthomonas campestris pv. campestris strain 8004)
MLQVQLTRSVAVSIRAVACLSVYSVPSKGARCAALLIPFFFSAYGLLGASPAHAQTPPKA
TFCALPLGCYDTMEKAADALRNSKDYQGIGQYLKPYSKAFLNRGAGEVWTYFRVPFLKAA
SVSGPSYGVNLGIYGVGNPGCTASPEFGSSWCTEEGALIAKSLDILTTKLGKSCSLQSST
QTSDYNTTGLGLSSNGDVSYSSDKYFNATFNCLSNSGAPVSVSWRWNVYKKRKLTCEANF
TPSQGNLILAEAALTTEAVCKPKNDDNTWVTSPLKQFQSCSTNNPCHPTTGDKSREEKDF
EFAGRSFNRYYHSVNQTKSVIPVGEGWSLSYSDRFDSSNTAYLDEAGNRDVFTTVAAGTG
RARNSGRLYRRISNSTTYYRVIEETGEYRDFGKDGELLAVRNPASPDRDVTVVYEGTRIA
RLVDGHGRAVTFAYTDGRVTGMEIPGGGIVLYDYDVDGNLIAATYPDGAKHLYHYHEKGL
AEPQLVNYLTGITGESGQRYASFGYDTYGRVISSVLHGDTGAVDGVTLNYVAEGVTEVTQ
ASGAVKRFEYGSTIFSPVNNVTEGAASTSNTYFSDGRLQSVTDASGSKVSYEYAPAYRSA
VTVGDGTQEAVRTESVRDALTHQLTELNVKGAQGLVVSKRWTRNERGQALTQVEQDAVSG
KQRQQTFTYCEQADVTAGSCPLVGVLLRVDGARTDLSDATTYDYYPAAQGGDLKTITNAV
GQVTQFLSYDSAGRLLSQKDPNGVVTDYSYDARGRLTASIVRGQDSGSETDDRITRYSYW
PTGLVKQVALPGGDVSDFTYDSAFRLTKVSDRYGNAILYTLDKSGRRVKEEIQDSKGVLK
ATMSRLYDELGHLKTTADAQGNPTDFTYDAVGTLKERTDAMGRSSTYTYDALHRLKQSIE
DAGGIKATSAFQYDVLGQPSVVTDPKSLKTTYQRNGLGELLALTSPDTGSTGFTYDDAGN
VLSRKDAANRQATYTYDALNRPVSVSYADAALETRFVYDVAPAVCVAGEQFAAGRLASMK
DGSGTTQYCYNRFGDLVRKVQTTNGKALTVRYAYTAGGRLTSMVYPDGAMVDYVRNELGQ
VAEVGYTAPGGSREVLVKGATYLPMGPVDGWTYGNGRVLTRAYDQDYRPKAIQDKAVGGL
DVGFGFDEVGNLTSLTPAGNPTPEIGLGYDTLGRLTALTDGVTGTVIDGYSYDATGNRLS
AKVGSVTQAYTYPTTNHRLSAVAGVARTYDKTGNTLSIGGKAREFPYDASGRMSMVKRAG
VLVMNYRYNGKGEQVRRFLGTTITYTLYDEAGHWLGDYDNNGAPKQQAIWLDDLPVGLLA
NANKLHYIEPDHLGSPRVVVDPVRNVAAWSWSLKGEAFGNTAPNQDPDGDGAALVLDMRF
PGQRFDAASGLNQNYFRDYDSATGRYGQSDPIGLGGGLSTFGYVGGSPLYLIDPLGLESG
TFQFGQYRMKQQNLSRALIEVVRRQ