Protein Info for Xcc-8004.3192.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Cytochrome c heme lyase subunit CcmL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 111 to 130 (20 residues), see Phobius details PF03918: CcmH" amino acids 18 to 146 (129 residues), 161 bits, see alignment E=5.6e-52

Best Hits

Swiss-Prot: 48% identical to CCMH_PSEAE: Cytochrome c-type biogenesis protein CcmH (ccmH) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K02200, cytochrome c-type biogenesis protein CcmH (inferred from 99% identity to xcc:XCC1657)

Predicted SEED Role

"Cytochrome c heme lyase subunit CcmL" in subsystem Biogenesis of c-type cytochromes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X8B8 at UniProt or InterPro

Protein Sequence (150 amino acids)

>Xcc-8004.3192.1 Cytochrome c heme lyase subunit CcmL (Xanthomonas campestris pv. campestris strain 8004)
VSLRQRTARLLLALLLGMLLAPPLAAQAVDPLPFKDRNEETRFQRLTAQLRCLVCQNENL
ADSNADLARDLRHQVFAQLQAGRSDAQIKQYMVERYSDFVLYDPPVKRGTWLLWFGPLLM
LGAGAAVVLHTVRKRARAGTPVAPQTEEDW