Protein Info for Xcc-8004.317.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Dipeptidyl anminopeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 697 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF02129: Peptidase_S15" amino acids 401 to 543 (143 residues), 34.9 bits, see alignment E=4.2e-12 PF20434: BD-FAE" amino acids 422 to 615 (194 residues), 50.3 bits, see alignment E=6.8e-17 PF12697: Abhydrolase_6" amino acids 430 to 638 (209 residues), 39.4 bits, see alignment E=3.3e-13 PF00326: Peptidase_S9" amino acids 449 to 658 (210 residues), 146.8 bits, see alignment E=2e-46 PF01738: DLH" amino acids 450 to 645 (196 residues), 38.4 bits, see alignment E=3.2e-13

Best Hits

Swiss-Prot: 73% identical to DAPB3_PSEMX: Dipeptidyl aminopeptidase BIII (dapb3) from Pseudoxanthomonas mexicana

KEGG orthology group: None (inferred from 100% identity to xcc:XCC0243)

Predicted SEED Role

"Dipeptidyl anminopeptidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X4C6 at UniProt or InterPro

Protein Sequence (697 amino acids)

>Xcc-8004.317.1 Dipeptidyl anminopeptidase (Xanthomonas campestris pv. campestris strain 8004)
MQRLLLASSLLLALSACSDKSAPANTADAAAPAAAPAATAPATAPELIPRDALFGNPERA
SVRISPDGKYLSWVAPLDGVLNVWVAPVDAPDKARAITKDTARGIRSYYWTYHSDTLLYL
RDTGGDEDFHLYAVNLSDGSSKDLTPFKKTNAEVYGISDQHPDAIMVGMNDRDAKWHDLY
KVELASGTRTLVQKNTDSLDSYLLDGNYQLRYATRATDDAGRELLVPEGKGWKSVDRIPF
EDVTNTAPAGLTDDGKTLYMLDSRNRDTAALYAIDTASNARTLLFEDARADAGSTLNDPK
TGVVQAVSTDYLREEWKTLDTSIAADLQKLKSLGPGDAGIAARTLDDRTWIVAYSAAETP
LTYYRYDRADGGKLTKLFSARPALEGKPLVPMWPQEIAARDGLKLVSYLSLPAEADSNHD
GKADKAVPLVLFVHGGPWARDSYGYGAYEQWLANRGYAVLSVNFRGSTGFGKAFTNAGNG
EWAGKMHYDLLDAVQWAVKQGVTTPQDVAIMGGSYGGYATLVGMTFTPDAFKCGVDIVGP
ANLNTLLGTVPPYWASFYKQLTKRMGDPATAAGKQWLTERSPLSHVDKISKPLLIGQGAN
DPRVKQAESDQIVNAMKAKNIPVTYVLFPDEGHGFQRPENSKAFNAVTEGFLSQCLGGRA
QPIGADFEGSSITVPEGADRITGLADALKTHTQAIRK