Protein Info for Xcc-8004.316.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: FAD-dependent pyridine nucleotide-disulphide oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 TIGR04511: putative peptide maturation dehydrogenase" amino acids 3 to 380 (378 residues), 564 bits, see alignment E=1.6e-173 PF00881: Nitroreductase" amino acids 179 to 368 (190 residues), 103 bits, see alignment E=1.1e-33 TIGR03605: SagB-type dehydrogenase domain" amino acids 196 to 367 (172 residues), 128.8 bits, see alignment E=1.5e-41

Best Hits

KEGG orthology group: None (inferred from 99% identity to xca:xccb100_0264)

Predicted SEED Role

"FAD-dependent pyridine nucleotide-disulphide oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (398 amino acids)

>Xcc-8004.316.1 FAD-dependent pyridine nucleotide-disulphide oxidoreductase (Xanthomonas campestris pv. campestris strain 8004)
MQLRRCATLFFELRDAAVFDLSQLLAGGDGLRRRIRCFALAPHLDAEVEIAAADREWLST
LSSVRWCAVDQLPSLPESLDQLIKQGLVISDQPEHAQHRSNDEQVQQQRWWPLAALWHRF
ARWRGEDSVATMEAQGMTTAEGMVERLGAPPPEVVDRGDAGQRIPLPRATPGPFDALLAR
RVTCRNFDPQRLLSAELLGQMLERSVMARARVEVGHDTAFLKKPVPSGGSLHPTETYLLV
QRVQGVDSGLYHYRPLEHALQRLPSPAQPLAAVARNALSGQHWFADAPVLMILAPRFLRS
FWKYRNHAKAYRAMILDVGHIAQTVYLSATDLGLGAFVTSAINEVDIEQVLGLDGLQDGP
LAICGFGWRAEQMRNTELDPGGAIWSQAGNPAQAGNHV