Protein Info for Xcc-8004.3150.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF02611: CDH" amino acids 34 to 253 (220 residues), 268.9 bits, see alignment E=1.9e-84

Best Hits

Swiss-Prot: 40% identical to CDH_HELPJ: CDP-diacylglycerol pyrophosphatase (cdh) from Helicobacter pylori (strain J99 / ATCC 700824)

KEGG orthology group: K01521, CDP-diacylglycerol pyrophosphatase [EC: 3.6.1.26] (inferred from 100% identity to xcb:XC_2537)

Predicted SEED Role

"CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26)" in subsystem Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 3.6.1.26)

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.1.26

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XA43 at UniProt or InterPro

Protein Sequence (265 amino acids)

>Xcc-8004.3150.1 CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26) (Xanthomonas campestris pv. campestris strain 8004)
LKTNMRCRVAQFLAVALSVAGCASPPPVRHASDPDALWRIVTTHCLQAGPVPDDCAAVWP
DPQRQAVVLKDNHGRFQYLLVPSVRVSGIEDPSLLQADAPNYFASAWSARSFVASALAQP
LPRAYVSLALNSPYGRSQEQLHIHIDCLRPDVYAALQREHAQIGPQWRALAEPLLGHVYL
ARTLPGDTLNEDPIRLLASAIPADASLRDYSLVVAGAQLDEGQPGFVLLATRQDAATGNR
ASGEELQDHACGLVTGARKVLPGVR