Protein Info for Xcc-8004.3100.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 654 PF08448: PAS_4" amino acids 29 to 135 (107 residues), 47.7 bits, see alignment E=5.1e-16 amino acids 152 to 255 (104 residues), 50.4 bits, see alignment E=7.2e-17 amino acids 274 to 379 (106 residues), 51 bits, see alignment E=4.8e-17 TIGR00229: PAS domain S-box protein" amino acids 29 to 136 (108 residues), 46.4 bits, see alignment E=2e-16 amino acids 152 to 254 (103 residues), 45.3 bits, see alignment E=4.6e-16 amino acids 274 to 383 (110 residues), 56.5 bits, see alignment E=1.6e-19 PF00989: PAS" amino acids 31 to 120 (90 residues), 30.1 bits, see alignment E=1.2e-10 amino acids 143 to 242 (100 residues), 29.2 bits, see alignment E=2.4e-10 amino acids 274 to 364 (91 residues), 40.7 bits, see alignment E=6.6e-14 PF13426: PAS_9" amino acids 35 to 132 (98 residues), 39.6 bits, see alignment E=1.7e-13 amino acids 158 to 253 (96 residues), 36.9 bits, see alignment E=1.2e-12 amino acids 275 to 376 (102 residues), 49.2 bits, see alignment E=1.6e-16 PF08447: PAS_3" amino acids 41 to 126 (86 residues), 49.4 bits, see alignment E=1.4e-16 amino acids 163 to 248 (86 residues), 52.8 bits, see alignment E=1.2e-17 amino acids 285 to 370 (86 residues), 55 bits, see alignment E=2.5e-18 PF13188: PAS_8" amino acids 274 to 304 (31 residues), 15.4 bits, see alignment (E = 4.3e-06) PF00015: MCPsignal" amino acids 449 to 601 (153 residues), 148.5 bits, see alignment E=5.6e-47

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 100% identity to xcb:XC_2504)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XA54 at UniProt or InterPro

Protein Sequence (654 amino acids)

>Xcc-8004.3100.1 Methyl-accepting chemotaxis protein (Xanthomonas campestris pv. campestris strain 8004)
MRLQPLVGRLTSLWTRGLQHKATAMDRVMAVIEFDLEGRILDANHNFLALMGYRLEDVVG
KHHRMFVHPSERESDGYRQFWDTLRRGDFHAGRYCRLGNGEREVWINASYNPLLDRSGKP
YRVVKYATDITAQVRQTADFEGRIDAIDKVMAVIEFSLDGTVLDANANFLEVMGYRLDEI
RGQHHRLFVEPAQRQSAEYRVFWEKLGRGEFDAGRYKRVGRDGREVWIQASYNPVLDERG
RPYKVIKYATDITRQVVESADADGRIQAIAKVMGVIEFDLDGRVLSANDNFLAILGYRAD
EAIGKHHSVFVDAAYSASEDYRQFWATLARGQFDAGRYRRLRKDGSTAWIQASYNPILDV
SGRPYKVVKYATDVTDQVRSAERMRDLVRQTMGIAQNVQREAHHISASNQELVSRAASQS
DAVQQTSTSIEQLAETVRANSENAGAAQHMAEESATVARKGAHVIAEVVQTTSSIRKATD
RIGQIIEVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRCSVSAREIRS
LIEDATNQVGDGSRLAEQAGKVMQDMVTSVLKVTATVEQIAAASQVQAQDISTANQALQS
IGVQARDQAQMVDDLARSARVLEADADALFALVNGDEVGQPQDAPAVEVLARRA