Protein Info for Xcc-8004.3077.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Galactose-binding protein regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 PF00126: HTH_1" amino acids 39 to 96 (58 residues), 60.4 bits, see alignment E=1.3e-20 PF03466: LysR_substrate" amino acids 123 to 330 (208 residues), 117.8 bits, see alignment E=4.7e-38

Best Hits

KEGG orthology group: None (inferred from 100% identity to xca:xccb100_2513)

Predicted SEED Role

"Galactose-binding protein regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X866 at UniProt or InterPro

Protein Sequence (345 amino acids)

>Xcc-8004.3077.1 Galactose-binding protein regulator (Xanthomonas campestris pv. campestris strain 8004)
VLQMKFSAYSIPPTNTRPRRHPMANSGTPWFNAARLKTRQLLLLLHLHEQRSVLRAAEAA
SMTQPAASKLLAEMEDMLGVKLFERHARGVEPTWYGHVLIRRARAAMSEIGRAQEEIAAL
RAGRMGQASIGTVVNPGTNLVPQAIAEVKREFPDILVRVEMDYSRPLVAKLLDGQLDIVI
GRILGPEGVGELEFEPLADEPHSVIARAGHPLASRANLQHADLVRHGWILPPADSVLRAR
LDSMFMEHGVQTPTNAIETSSLPVTSTLLRGSDMLTALPVESVAPLIQAKLLTVLPIELG
VRMESFGIIRRRDYILPPGAERILQALRSTARRLYPGLRSPESPV