Protein Info for Xcc-8004.3044.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Predicted sodium-dependent galactose transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 520 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 74 to 75 (2 residues), see Phobius details amino acids 79 to 79 (1 residues), see Phobius details amino acids 81 to 102 (22 residues), see Phobius details amino acids 123 to 146 (24 residues), see Phobius details amino acids 157 to 174 (18 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details amino acids 241 to 261 (21 residues), see Phobius details amino acids 282 to 307 (26 residues), see Phobius details amino acids 327 to 346 (20 residues), see Phobius details amino acids 373 to 395 (23 residues), see Phobius details amino acids 404 to 426 (23 residues), see Phobius details amino acids 433 to 455 (23 residues), see Phobius details amino acids 461 to 480 (20 residues), see Phobius details amino acids 498 to 519 (22 residues), see Phobius details TIGR00813: transporter, solute:sodium symporter (SSS) family" amino acids 39 to 439 (401 residues), 360 bits, see alignment E=9e-112 PF00474: SSF" amino acids 39 to 439 (401 residues), 237.5 bits, see alignment E=1.3e-74

Best Hits

KEGG orthology group: K03307, solute:Na+ symporter, SSS family (inferred from 100% identity to xcc:XCC1776)

Predicted SEED Role

"Predicted sodium-dependent galactose transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X848 at UniProt or InterPro

Protein Sequence (520 amino acids)

>Xcc-8004.3044.1 Predicted sodium-dependent galactose transporter (Xanthomonas campestris pv. campestris strain 8004)
VGLATLDIVIVLVYLAGIFVLAQWVSREKAGHSKSAEDYFLASKSLPWWAIGASLIAANI
SAEQIIGMAGSGYAIGLAIASYEWMAALTLLIVGKFFLPIFLRNGIYTMPQFLEQRYGKW
IRTLMAVFWLLLYVFVNLTSILWLGSIAVSQVTGMDQTLALTLIGVFALVYQLYGGLKAV
ALTDIVQVTLLVLGGLLVTGLTLSRIGDGAGVLAGFKQLWSAHPEHFHMILSKDNPFYKD
LPGLSVLLGGLWVMNISYWGFNQYIIQRALAAKNIGEAQKGMVFAAFLKLLMPVVIVVPG
IAAVVLAPDLAKPDQAYPTMMQLLPTGILGLVFAALVAAIVASLASKINSVATIFTLDFY
AKFRPQTEQKQLVRVGRIVAAVSVLIGILTARPLLGNFDQGFQFIQEFTGFFTPGVVVIF
MLGLFWKRANEAGALTAAIGSVVLSFALKILWPALPFMDRIGVVFVAALVLAVVVSLLTP
ATQARDLIRTKDVAYGTTLGFKIGAVGVVAILIALYAVFW