Protein Info for Xcc-8004.2879.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 451 PF18947: HAMP_2" amino acids 122 to 177 (56 residues), 28.3 bits, see alignment 1.4e-10 PF00015: MCPsignal" amino acids 248 to 399 (152 residues), 173.8 bits, see alignment E=3.1e-55

Best Hits

KEGG orthology group: K05874, methyl-accepting chemotaxis protein I, serine sensor receptor (inferred from 100% identity to xcc:XCC1873)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X815 at UniProt or InterPro

Protein Sequence (451 amino acids)

>Xcc-8004.2879.1 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) (Xanthomonas campestris pv. campestris strain 8004)
LQRLLKDVQEQLRAHLPSFDADKLIDTSINQFHAVPKDHERMLEQLSGTNVAQIAVGDRI
VRQVVSPVLNAAGERMGFVVEWADRTQEVQVEEEVARIVQAAAAGDLSERVGTAGKQGFL
LQLAQQLNMLLDNNADGLSRVSALLSSLSQGDLTARMDGDLQGVFATIRDDANATADQLA
GIVRRIKDSSLAINSAATEIATGNSDLSRRTEQQAAALEETAASMEELTATVKQNADNAD
QANRLVLNAACVAAQGGDVVGRVVSTMADIDASSKRIAEIISVIDGIAFQTNILALNAAV
EAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLIEDSVARIGNGAALASEAGSTMQQ
VVSSVQRVTDIMGEITSASREQAAGITQVNQTVTQMDETTQQNAALVEEATAAARSMEEQ
AAQLVDAVAVFRLEQEDRLSTLLANARHAYH