Protein Info for Xcc-8004.2869.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 752 signal peptide" amino acids 12 to 12 (1 residues), see Phobius details transmembrane" amino acids 13 to 32 (20 residues), see Phobius details amino acids 191 to 214 (24 residues), see Phobius details PF12729: 4HB_MCP_1" amino acids 7 to 175 (169 residues), 46 bits, see alignment E=1.2e-15 PF00672: HAMP" amino acids 212 to 263 (52 residues), 33.2 bits, see alignment 1.4e-11 PF18575: HAMP_N3" amino acids 315 to 351 (37 residues), 26.4 bits, see alignment 1e-09 PF00015: MCPsignal" amino acids 508 to 662 (155 residues), 187.5 bits, see alignment E=4.9e-59

Best Hits

KEGG orthology group: K05874, methyl-accepting chemotaxis protein I, serine sensor receptor (inferred from 100% identity to xcb:XC_2309)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X7P9 at UniProt or InterPro

Protein Sequence (752 amino acids)

>Xcc-8004.2869.1 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) (Xanthomonas campestris pv. campestris strain 8004)
MNKFNDWPIRRKLMIAFCLSAVLTALLGGLGFSRMKQMQQETTLINQDVVPVLSRLSELR
GFAGEFRVYEVGQFVNLDDPERYAYFFKRMDEIQAKYAETQKALDAKIGAASPLKAEYAK
LADASTRYFAANLKLRELYPQPDRAAAMEFSRKQSGEIRKELFASVHKMYAQQSKALGDM
VTASAASFKFTSAVLLLGTLLMAALSVTFGWLIARSITTPLSKALGAIQAVSRGDLSVQV
GKTSNDEIGQMLEATGRMTQMLRRFSDETARMSHLHAAEDITHRMPEDFPGVYGTLAGGI
NTMIFEHLDAIIDSVRILNQYAQGDLTEDARRLPGSRAVLHEAMDAAKASLLSINTEIKQ
LAQAAAAGDFSARGDVARFKYDFAVMVADLNSMMEVSDRNLGKLSQLLGAVADGDLTARM
DGEFHGVFARLRDDANATVQRLTDIVGRIKHSTLTINTAASEIAAGNQDLSQRTEQQAAN
LEETAASMEELTSTVKQNAEHARQANQLAIGAADVASHGGSVVGQVVTTMSGIETSSKKI
AEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKGLI
DDSVSKVAEGSALVHQAGTTMSEIVSSVQRVTDIMSEISAASQEQSAGIEQVNQTVTQMD
EATQQNAALVEEATAAARSMEDQAQQLTEAVALFRLSSELESVTRATPVVRAQAAVARPA
AKAAALAKPSKPVVRAAPRAVTTSNESDWAEF