Protein Info for Xcc-8004.2868.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 transmembrane" amino acids 36 to 60 (25 residues), see Phobius details amino acids 341 to 364 (24 residues), see Phobius details PF02743: dCache_1" amino acids 65 to 318 (254 residues), 52.7 bits, see alignment E=8.5e-18 PF00672: HAMP" amino acids 363 to 415 (53 residues), 39 bits, see alignment 1.6e-13 PF18947: HAMP_2" amino acids 587 to 637 (51 residues), 25.5 bits, see alignment 2.1e-09 PF00015: MCPsignal" amino acids 705 to 859 (155 residues), 184.7 bits, see alignment E=2.7e-58

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 99% identity to xca:xccb100_2168)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (950 amino acids)

>Xcc-8004.2868.1 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) (Xanthomonas campestris pv. campestris strain 8004)
LSDVSRPPARRAFLPTMQIGPMTSTLSSPRRGASLAYRLMLGTAVVALLCFGLTAAITYW
QSSSALTASAQATMQNAARYQAEQIGSELGQALTTGKSVATTLLVQRANNSIDRDTAAAV
VHDQLQDHPEWVGMGTLWEAQAFDAKDSAFVSAKGHDASGRFMTYWGRDGQSLVREPLTD
YDTPGLGDWNLKPRELGRQTVAEPYNYQIGGKTVLMTTLSTPIQQDGTFLGVVTVDIALA
ALQQRLGALRPMDSGYVELLSPGGIVLASRDTARIGKTFADARHRAVLDAIKAGKDAVDF
VPDENGAVSAYVPLQIGQAQERFALGVVVPYATIMQQAHRLLWTILLVGLGSALVLSIAL
FALLRRQVVRPLDAAARVADAIASGKLDNQIAVRRQDEVGRLLSAMQRMQSDLRQRIERD
TQIANENLRIRTALEHSEMEVLLADEHHTAVFITEALHTSFKHGEAAFHAKGQTGFSADA
VVGQPLEYVFGSDADGKARTQRLQQLTATVSERYTFGPVTLDLTMTPLYAGDGRRSGSML
LWRNVSAEVSVQNEVAALVQSALLGDFTQRLALQDKHGFYLEFGRQLNDLVDTTAQGLER
ISRLLSALAEGDLTVRMDGDFQGVFARMRDDANATVAQLTGIVSGIQTSATQINAAASEI
AAGNNDLSQRTEQQAANLEETAASMEELTSTVKQNAESARQANQLAIGAASVASHGGEVV
AQVVTTMSGIEVSSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR
TLAQRSAGAAKEIKHLIDDSVSKVAQGSSLVHQAGTTMAEIVASVQRVTDIMGEISAASQ
EQSAGIEQVNLTVTQMDEATQQNAALVEEATAAARAMEEQAGQLSDAVAVFKLGTTATTT
APVSLPRRAAVSPATAARASASVKHARTPAAEPAKASAACQSNKEQWQNF