Protein Info for Xcc-8004.2824.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: GGDEF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 996 signal peptide" amino acids 1 to 44 (44 residues), see Phobius details transmembrane" amino acids 755 to 778 (24 residues), see Phobius details PF07494: Reg_prop" amino acids 56 to 78 (23 residues), 17.6 bits, see alignment (E = 8.5e-07) PF07495: Y_Y_Y" amino acids 690 to 747 (58 residues), 50.3 bits, see alignment 4.5e-17 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 816 to 977 (162 residues), 130.6 bits, see alignment E=2.3e-42 PF00990: GGDEF" amino acids 820 to 974 (155 residues), 128.2 bits, see alignment E=6.5e-41

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_2274)

Predicted SEED Role

"GGDEF family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X7K9 at UniProt or InterPro

Protein Sequence (996 amino acids)

>Xcc-8004.2824.1 GGDEF family protein (Xanthomonas campestris pv. campestris strain 8004)
MPTLPALLALLLPRRGSLRARPWLPAVCMLVLALLGTAGAAHAQTFSFREYDQADGLQGM
SVNGILEDRNGAVWVATETALHRFERDRFVPVGAEQGLDARYTRALTLDRAGRLWVATAN
GVFVRIGERFEQVHYNGKRIRADAGNVIAAYRNGVAVVSDNTLLALTPAAVTGWQVQPLP
LRAADGTVLPPRRALLADGNDLWVACAATVCRLDAHGTLVEVLSDEEGVPAKRWRVIFRD
RAGRLWLRGGGLIISRGPGEGRFRSHPSSAQATFNTLSGATTMVEDPQGRLLTRADHGLV
RWQDGHWTAIGADQGLHLDAMVGPLLQQSTGTLWIGTRGMGIQRWLGYGSIEHLTEAQGM
AAAPTWAIQRLPDGTLAVGADGGGSLLPAQAQRAQPWLQHDGQPLPQALAIAVAPDGAGW
VSFFSGAIARRDPITGQTRRVMDLPSPVYKLVFDRSGTLWMATPRGIYHGSSQAPYPLAP
DVALAGTFIGDLDLDAQGRLWAATADGLYRRDGNRWVQVPVHGDLPSQDLFQLDFAADGE
LWVSLREVGLWHGRVQPDGSVALQAVTDPLVSKVMPFILRHDRKGRLWVGSSQGLDLYQH
GHWSRITRAEGLLWDDMSANAFFEDTDGSIWIGSSRGLSHLRQPERLFAAPPLRVEIAQV
QRGERSLRADASVGWSETPLEIDLRTPGVEGGPERISFRYRVEGRQARWTTTSLSHITYP
LLPPGNYTLEVQALDAYQRSASPIAQFAFALRPPWWRSALAIVAYVLAGIGGVVALLRWR
TRKLLARKQELEHLIAERTAELEQDKRDLEAARAALTHKATHDELTGLLNRAGILEALRG
MLDSAPLREQPLAVVLIDLDYFKQVNDQHGHLAGDAVLAGVGKRLNALVRGNDRIGRYGG
EELLALLPGLGADATHRLDALHAGICGDYPTGEVVLPITCSIGVAWRHPGDSVEHLLARA
DAALYLAKRNGRNRIAYDAAPQLHASDAARNADNAG