Protein Info for Xcc-8004.2818.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Flagellar biosynthesis protein FliQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 135 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 29 to 49 (21 residues), see Phobius details TIGR03500: flagellar biosynthetic protein FliO" amino acids 35 to 102 (68 residues), 80.3 bits, see alignment E=4e-27 PF04347: FliO" amino acids 47 to 131 (85 residues), 79.9 bits, see alignment E=6.2e-27

Best Hits

KEGG orthology group: K02418, flagellar protein FliO/FliZ (inferred from 98% identity to xca:xccb100_2214)

Predicted SEED Role

"Flagellar biosynthesis protein FliQ" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X7W8 at UniProt or InterPro

Protein Sequence (135 amino acids)

>Xcc-8004.2818.1 Flagellar biosynthesis protein FliQ (Xanthomonas campestris pv. campestris strain 8004)
VIGLLAIAAPAAAKATQVGAQAPSSPGLFGAVFALLLVLALIVGLGWLLKRMPGSGFRSS
EGLRVVTSLAVGAKERVVVVEVNGQQLLLGVTAGGISTLHTLAEPLPPTPAPTLPNFKQL
PNFAQLLAQKLRKDP