Protein Info for Xcc-8004.2806.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: O-antigen biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1211 PF13641: Glyco_tranf_2_3" amino acids 24 to 157 (134 residues), 33.9 bits, see alignment E=9.1e-12 amino acids 593 to 815 (223 residues), 59.1 bits, see alignment E=1.8e-19 PF00535: Glycos_transf_2" amino acids 27 to 145 (119 residues), 63 bits, see alignment E=1e-20 amino acids 596 to 775 (180 residues), 76.4 bits, see alignment E=7.7e-25 PF13712: Glyco_tranf_2_5" amino acids 660 to 805 (146 residues), 36.7 bits, see alignment E=1.1e-12 PF13632: Glyco_trans_2_3" amino acids 680 to 852 (173 residues), 32.6 bits, see alignment E=2.3e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to xca:xccb100_2225)

Predicted SEED Role

"O-antigen biosynthesis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X7J7 at UniProt or InterPro

Protein Sequence (1211 amino acids)

>Xcc-8004.2806.1 O-antigen biosynthesis protein (Xanthomonas campestris pv. campestris strain 8004)
VRCLSARPLTIPMPTSFAATATAPRVTVAVPAYRATFLKTALDSVLAQDMHDLELLICDD
CPTDAVAEVVKNFLDSEHGAQIRYLRNPQPLLEVGNFGRCIAQARGTYLKFLCDDDVLLP
GCLTAMADVLDRHPEVALVSSRRQLIDERGALLPESGANAIPFEGDVCVHGQELVSFLAE
RTLNFIGEPSTVMFRTAQMRPHADAPFSLQGRRIQWLGDLTMYVNLLRKGHLAMLQSPLS
CFRISAGQVSNAARLKPDIGRAGFTAFRTAIGELGWQRAVDNHQVGVRTLEGAQPFVALD
LGVRVDRMLRGLPPVLPSSGEILRNWLDQRVPDNAQHRLIEARFQAAGGGPLICIVLLDR
HGDAEAIDATVQSLIAQACQYSRIQLRILSPLAVVTPQTAPFSIQLHRHEGSLAQLEAIN
ALSATESADWLLPVKAGATFTASGLLTVALDLLGDDSLRAVYADEMIRAEDGELSALLRP
DFNLDLLLSMPASMVRNWLYRREIFVAAGGLDPALTDAAELDLLLRLIDAGGLDGLGHVH
EPLLVSPTSRVWSHPSEQQALLRHLHHRSYAQAKIHSHLPGCYRIEYGHAHTPGVSIIVP
TKNQLGMLQRCVETLLEKTAYSNYELLIVDNGSTDADACQWLDGIEAMDSPQLRVLRYPH
PFNYAAMNNLAAQHARGEYLVLLNNDTAILQENWLDALLNHAQRPEVGVVGAKLLYPNGT
VQHAGVVLGLRGPAEHPFNGQALDAPGYMYRLQVDQNYSAVTGACMMVRASLYAEVGGLD
EDVFKVSYNDVDLCLKIRQAGYLVVWTPHAVLLHEGSVSQTQVDTAPQLAKVQRFEAEQE
AMYRKWLPWIANDPAYNRNLNLNGDAFQVEDNNSLTWRPLRWRPLPTVLAMTADQTGCGN
YRIIQPVHAMQAAGLADAIWSLRYLSPVEMQRLQPETLVLQRQMFDYNLEPQQRGTRFSN
CFKVAELDDYLPNVPRKSLHRDAIPNDIMRSMRRSLAMVDRFVVSTPALAEALHGLHRDT
RVVENRLPLPWWRDRQGQRRQGKRPRVGWGGGGGHQGDLEMIEEVIKALATEVEWVFFGM
CPESLQPYVHEFHPGVPIDLYPAKLAGLNLDLALAPLEDNLFNQCKSNLRLLEYGACGFP
VVCSDVRPYQGSLPVTRVRPRYRDWVEAIRMHTHDLDAAAAAGDALRAAVHRDWMLDQDH
AAHWLTQWLPD