Protein Info for Xcc-8004.2759.1 in Xanthomonas campestris pv. campestris strain 8004
Annotation: FIG002903: a protein of unknown function perhaps involved in purine metabolism
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 100% identical to HFLD_XANCP: High frequency lysogenization protein HflD homolog (hflD) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
KEGG orthology group: K07153, high frequency lysogenization protein (inferred from 100% identity to xca:xccb100_2262)Predicted SEED Role
"FIG002903: a protein of unknown function perhaps involved in purine metabolism"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0H2X7R9 at UniProt or InterPro
Protein Sequence (204 amino acids)
>Xcc-8004.2759.1 FIG002903: a protein of unknown function perhaps involved in purine metabolism (Xanthomonas campestris pv. campestris strain 8004) MSSSMDHRVLALAGVAQALQQVRRIAETGHSEAATVRTAVDSVFRVDAATPEGVYGSSAD VAPGLRLLHNYFTNQGKDDMLPRLALAVLQLERRFVRDHSTVETVSKGIEAAARQAQTLG DSAHPDVLSALGALYAQTISHLRPKVMVQGNPHYLGQAGVVAEIRALLLAAVRSAVLWRQ MGGSLWDFLFAKRAMIEAVARALR