Protein Info for Xcc-8004.2743.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: FIG01210856: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 transmembrane" amino acids 39 to 61 (23 residues), see Phobius details amino acids 73 to 92 (20 residues), see Phobius details amino acids 118 to 136 (19 residues), see Phobius details amino acids 166 to 191 (26 residues), see Phobius details amino acids 203 to 222 (20 residues), see Phobius details amino acids 233 to 258 (26 residues), see Phobius details amino acids 274 to 295 (22 residues), see Phobius details amino acids 355 to 377 (23 residues), see Phobius details amino acids 388 to 411 (24 residues), see Phobius details PF00654: Voltage_CLC" amino acids 82 to 411 (330 residues), 229 bits, see alignment E=4.8e-72

Best Hits

Swiss-Prot: 72% identical to ERIC_PSESM: Chloride/fluoride channel protein (eriC) from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)

KEGG orthology group: None (inferred from 100% identity to xca:xccb100_2276)

Predicted SEED Role

"FIG01210856: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X9F3 at UniProt or InterPro

Protein Sequence (460 amino acids)

>Xcc-8004.2743.1 FIG01210856: hypothetical protein (Xanthomonas campestris pv. campestris strain 8004)
VSLLTSPLPCQPSPSNRQAAMSGFRRPEYFDLFLQLAKWLAIASVVGVLAGTASALFLLA
LEAATAWRESHAWVLWLLPVAGFGVGLVYHLLGKDVDAGNNLIIDEIHDPRKTLPLRMAP
LVLGGTVISHLFGASVGREGTAVQMGAALADQLTRVFRLLQQDRRLLLMAGISAGFASVF
GTPLAGAIFGLEVLVIGRLRYDALLPCTMAAIVANQVCLAWGIQHTHYAIERIVPVGVGS
VLAVMAAGVVFGLVGRLFATATHLLGQSVKQAIAYAPLRPLLGGVVIALAVWLLGTQRYI
GLGIPEIVRAFHEPMEPWDFLGKACFTVASLATGFKGGEVTPLFYIGATLGNALAPLLQL
PFSMLAGLGLVAVFAGASNTPIASTLMAVELFGADIASFAAVACITAYLFSGHRGIYHAQ
RIGDGKHHRRGIGPEDTARHADLPAADSQRSAAADHDNRQ