Protein Info for Xcc-8004.2712.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 817 PF07992: Pyr_redox_2" amino acids 5 to 283 (279 residues), 201.5 bits, see alignment E=9.2e-63 TIGR02374: nitrite reductase [NAD(P)H], large subunit" amino acids 6 to 793 (788 residues), 922 bits, see alignment E=1.9e-281 PF13738: Pyr_redox_3" amino acids 71 to 257 (187 residues), 32.7 bits, see alignment E=2.2e-11 PF00070: Pyr_redox" amino acids 147 to 228 (82 residues), 64.5 bits, see alignment E=4.6e-21 PF18267: Rubredoxin_C" amino acids 319 to 386 (68 residues), 68 bits, see alignment E=2.5e-22 PF04324: Fer2_BFD" amino acids 423 to 470 (48 residues), 52.1 bits, see alignment 3.1e-17 amino acids 487 to 536 (50 residues), 46 bits, see alignment 2.5e-15 PF03460: NIR_SIR_ferr" amino acids 562 to 624 (63 residues), 50.5 bits, see alignment 6.3e-17 PF01077: NIR_SIR" amino acids 632 to 769 (138 residues), 107.1 bits, see alignment E=2.8e-34

Best Hits

KEGG orthology group: K00362, nitrite reductase (NAD(P)H) large subunit [EC: 1.7.1.4] (inferred from 85% identity to psu:Psesu_0372)

Predicted SEED Role

"Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)" in subsystem Nitrate and nitrite ammonification (EC 1.7.1.4)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.7.1.4

Use Curated BLAST to search for 1.7.1.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X7C4 at UniProt or InterPro

Protein Sequence (817 amino acids)

>Xcc-8004.2712.1 Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) (Xanthomonas campestris pv. campestris strain 8004)
MKQPRLVVIGNGMAGIRTVEELLKLMPGMYHITVFGAEPHPNYNRILLSPVLAGEQEFDD
IVLNPLQWYRDNGIHLHLNKEVTRIDRVRRRVIAADGTEAEYDRLLIATGSVPFVLPIPG
NDLKGVIGYRDIQDTRTMIDTARTRQHAVVIGGGLLGLEAANGLKVRGMEVTVVHLAGWL
LERQLDPVAGNLLQQALRARGLEFRLNTATSALLGNAQGEVIGVRFADGSEIPADLVVMA
AGIRPNTRLAEEAGIHCSRGIVVNDSLQSFDPRVYAVGECANHRGIAYGLVAPLFEQAKV
CANHLAQFGIGIYRGSVASTKLKVTGIDLFSAGDFMGGDGCEEIVLSDPAGGVYKKLVIR
DDVLVGACLYGDTSDGGWYFKLLKDGTPIQAQRDQLIFGESALGDSGTGGQDRASAMSDS
DEVCGCNGVCKGTIVKAISEQGLFTVDEVKKHTKAASSCGSCTGLVEQILMNCLGSNFQE
TPKTKAVCACTDLSHGEVRRAIREHKLLTHAQAYAFMEWRTPNGCATCRPAINYYMLSTW
PHEAIDDPQSRFINERAHANIQKDGTFSVIPQMKGGVTNASELRRIADVADKYAVPMVKV
TGGQRIDLLGVKKEDLVDVWRDLGMQSGHAYGKSIRTVKTCVGSEFCRFGTQNSTQMGID
LETMLANMWSPHKVKLAVSGCPRNCAESGIKDVGIIAVDSGWELHVGGNGGIKTEVARFL
VKVTTAEEVREYTGAFLQLYREQAYYLDRTVHYIARVGLDYIRAQVVDDAANRRALYERL
LYSLEGLVDPWKARIAGERRQEYQPLRIAAPAATVKE