Protein Info for Xcc-8004.2608.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: NAD(FAD)-utilizing dehydrogenases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF03486: HI0933_like" amino acids 9 to 403 (395 residues), 253 bits, see alignment E=7.4e-79 TIGR00275: flavoprotein, HI0933 family" amino acids 10 to 403 (394 residues), 325.2 bits, see alignment E=5.7e-101 PF13450: NAD_binding_8" amino acids 11 to 42 (32 residues), 22.1 bits, see alignment (E = 3.7e-08) TIGR03862: flavoprotein, TIGR03862 family" amino acids 29 to 410 (382 residues), 581.9 bits, see alignment E=5e-179 PF22780: HI0933_like_1st" amino acids 195 to 351 (157 residues), 110.4 bits, see alignment E=2.2e-35

Best Hits

KEGG orthology group: K07007, (no description) (inferred from 100% identity to xcc:XCC2089)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X7F0 at UniProt or InterPro

Protein Sequence (417 amino acids)

>Xcc-8004.2608.1 NAD(FAD)-utilizing dehydrogenases (Xanthomonas campestris pv. campestris strain 8004)
MTYGNTPRLAVIGGGPAGLMAAEVARAAGLAVDLYEAKGSVGRKFLIAGKGGLNLTHSDP
PPVFAQRYRERSTEVGHWLQAFDAEALRAWARDLDVETYVGSSGRVFPMDRKAAPLLRGW
VRRLKEQGVSFHVQHRWLGWDDGGALRFATPTGEQAFAADAVILALGGGSWPQLGSDGQW
APLLEQRDIAVAPLQPANCGFDIAWTPHFVQRHAGAPLKAVVAQWQGRDGATQVLQGECV
ITATGIEGSLIYALSADLRTQIQTHGTATIWLDLVPGRTLERLQADLQKPRNGRSFSDHL
RRQTGIDGVKTALLFEHLGKQAGDDLTRVAQTLKQLPLRLLRPRPLAEAISTAGGVRLEA
LDAQLMARAQPGVFCAGEMLDWEAPTGGYLLTACFASGLRAAQGAVQWLQRGATAER