Protein Info for Xcc-8004.249.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Ammonium transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 491 signal peptide" amino acids 21 to 23 (3 residues), see Phobius details amino acids 42 to 45 (4 residues), see Phobius details transmembrane" amino acids 24 to 41 (18 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 121 to 143 (23 residues), see Phobius details amino acids 183 to 204 (22 residues), see Phobius details amino acids 211 to 233 (23 residues), see Phobius details amino acids 247 to 269 (23 residues), see Phobius details amino acids 281 to 301 (21 residues), see Phobius details amino acids 313 to 332 (20 residues), see Phobius details amino acids 343 to 361 (19 residues), see Phobius details amino acids 367 to 388 (22 residues), see Phobius details amino acids 400 to 421 (22 residues), see Phobius details amino acids 441 to 466 (26 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 88 to 489 (402 residues), 432.3 bits, see alignment E=9.3e-134 PF00909: Ammonium_transp" amino acids 90 to 489 (400 residues), 397.8 bits, see alignment E=2.4e-123

Best Hits

KEGG orthology group: K03320, ammonium transporter, Amt family (inferred from 100% identity to xca:xccb100_0207)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X430 at UniProt or InterPro

Protein Sequence (491 amino acids)

>Xcc-8004.249.1 Ammonium transporter (Xanthomonas campestris pv. campestris strain 8004)
MRSDPTHPGVPMKTGLVAGWKARFYSVCMLMLFSALVVGGLGNAQAQSGAQVTPLPTEPV
TTEPLPTAQPAAAPVAAAEAAPVVEKGDVAWMLTSTLLVLLMVVPGLALFYGGMVRAKNV
LSVLIQVAVVFSLLVVLWVFYGYSLAFSGEGPWIGNLDKALLKGVTIETLSATFTKGVSL
PEYVFVAFQATFAGITGALIVGAFAERAKFAAVLLFSVIWFTFGYLPLAHMVWATGGYLF
GLGALDFAGGTVVHINAGVAGLVGAYFVGKRAGLGREAIKPHNVTLTFVGASLLWVGWFG
FNAGSNLEANAGAALAFLNTLLATAAAVLGWSLTEKIIKGKSSALGVASGMVAGLVGITP
ACGTVGPFGAIIIGLAAGVLCVWGVTGLKRLLGADDSLDVFGVHGLGGIIGAILTGVFSA
ASLGGQKGGDYDMLHQVGIQALGVGITVGWIGVVSVVGFVVAKLVFGLRVTEEAEREGLD
ITSHGEAAYES