Protein Info for Xcc-8004.2464.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Lipoprotein releasing system transmembrane protein LolC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 transmembrane" amino acids 25 to 51 (27 residues), see Phobius details amino acids 273 to 294 (22 residues), see Phobius details amino acids 319 to 344 (26 residues), see Phobius details amino acids 353 to 363 (11 residues), see Phobius details amino acids 382 to 402 (21 residues), see Phobius details TIGR02212: lipoprotein releasing system, transmembrane protein, LolC/E family" amino acids 8 to 416 (409 residues), 467.9 bits, see alignment E=1.5e-144 PF12704: MacB_PCD" amino acids 30 to 243 (214 residues), 66.4 bits, see alignment E=4.4e-22 PF02687: FtsX" amino acids 276 to 409 (134 residues), 59.4 bits, see alignment E=3.6e-20

Best Hits

Swiss-Prot: 81% identical to LOLC_XYLFA: Lipoprotein-releasing system transmembrane protein LolC (lolC) from Xylella fastidiosa (strain 9a5c)

KEGG orthology group: K09808, lipoprotein-releasing system permease protein (inferred from 100% identity to xca:xccb100_2053)

Predicted SEED Role

"Lipoprotein releasing system transmembrane protein LolC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X741 at UniProt or InterPro

Protein Sequence (416 amino acids)

>Xcc-8004.2464.1 Lipoprotein releasing system transmembrane protein LolC (Xanthomonas campestris pv. campestris strain 8004)
LNRMFKPIPVAIGLRYLRAKRRNGFISFISMASILGIALGVTVLITTLAVMSGFQKEIRD
RLLQMAAHATVSAEGAPMQDWRHAVEVASADPRIAGAAPYIETESLLQGPRKQPAIVRGV
IPSEEAKVSVLAKKMQQGSVDSLTPGSYNIVIGKELALWLGVDVGDSIVVLLSDTQATPL
GAMPRLKRFTVSGIFEAGYNEIDRGLAVVNMEDLARVLRMDGVTGVRLRLHDMDQAFTVA
RDLALKLRGPYRVSDWTQENANLYHSLKMEKTVMGILLSLIVAMGAFNLVSSQVMLVTDK
QADIAILRTLGLSPGGVMQVFMVQGSLIGFMGTIMGVIGGIVLTLNLERILGAIEAVFSV
KLLPEDVYYITGLPTDMQTQDVVVITVVALVMSFLATLYPAWRASRTQPAEALRYE