Protein Info for Xcc-8004.2398.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1117 transmembrane" amino acids 103 to 123 (21 residues), see Phobius details amino acids 853 to 873 (21 residues), see Phobius details PF07495: Y_Y_Y" amino acids 785 to 845 (61 residues), 63.6 bits, see alignment 2.6e-21 PF07730: HisKA_3" amino acids 892 to 956 (65 residues), 43.9 bits, see alignment 5.9e-15 PF02518: HATPase_c" amino acids 998 to 1092 (95 residues), 44.3 bits, see alignment E=4.4e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to xca:xccb100_2002)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X708 at UniProt or InterPro

Protein Sequence (1117 amino acids)

>Xcc-8004.2398.1 hypothetical protein (Xanthomonas campestris pv. campestris strain 8004)
MQPRAGHAARRGTPPRLTGHAPRPTSGRGRTYPCTARYSNRAKGVPRALMPAGVASRHRP
TPLRSARPPPKEVVVLPPISSDNAAMPHEPVSYPASSLRLRVTHWVTLACCWLLLCVPAW
ASGIAATRDGVLQFHHTAWSTERGAPADIWDIAQADNGPLWLATGFGLFQFDGDRFARVP
PPNGEAYASHNMTALTLAPDDTAWVGYFGAGIDRLADGHLTHFAPGKDLPSGMVFKLERD
GSGRLWAAIDGGLCWFDGTRWHRAGADWGYPAARAQWLLRDRRGVLWVSDGTQLLRLPAG
GKRFEPSGQPVGPFTTMAESPDGSVWVADPYRGIFALTDARGQLLPAVTRAQPRFAGLFA
RRIRFMRDGALWGTDYAAGGVFRIATPLALAPVLEHVGTLQGLTSATAGPLLEDREGNLW
VGTNLGLNRFRHRALLPLAALLPGPATAVEMFTSRSGAAPGPLVAALRDNRLLALTRLRI
DRMQHGGAASTLAVPNTLRSWVLAEHALLRLQGGLVQPVPLPLGVAPGEIRALLVDAMDQ
PLVCPDARGPYRYDGTGWQPLAGVQETPCSVLARAHDGALWIGDVKGELRLLRGNRVRRY
SATDGLSVGPITALWSSPALTLVAGEAAVAVLGPDGRFRTLPDQASPLLQGVTGIVQDAA
GGVWLNGNRGVVHLSLQALTQSVQTGLPAPSLRLYDTMDGLPGIAQQATPVPSALAAADG
LLWFATNQGLAWLDPSQTYRNPTAPTVAITEVVANDRPYPLQAALRLPKWSDRLRIGYEA
VSLTRPERVRFRYRLDGVDAAWQDAGNRTEAFYTNLAPGRYRFEVAAANNDGVWNARGDT
LDVVIEPAFVQTWQFKLCCVLAAVAALAVAWRLRTRHVAGRLRARLEERYRERERIAREL
HDTLLQGTQGLILRLHTASRSLAWDDPRRQELEKTVELAERALIEGRDRVNGLRDTHSLR
TDLAGALQQARETTMPIPTATLDVLVNGRPLVLRAMVADELFQLGREALSNADRHARANK
IVLELRYGSRDFVLRIRDDGCGLAPDVLHGHARTGHWGLTGMQERARRIGAQMQLWSRPG
SGTEVQIVVPARAAYVRPPKRWCWPFQNARPTETPHG