Protein Info for Xcc-8004.2370.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Hypothetical protein USSDB1E

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1054 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00754: F5_F8_type_C" amino acids 200 to 299 (100 residues), 53.4 bits, see alignment E=1.5e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_1915)

Predicted SEED Role

"Hypothetical protein USSDB1E"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X8Q1 at UniProt or InterPro

Protein Sequence (1054 amino acids)

>Xcc-8004.2370.1 Hypothetical protein USSDB1E (Xanthomonas campestris pv. campestris strain 8004)
VKPIFLRLFAMAAVATAGAAQAQERVLDGFNDIAAWRLVVSNQVSGSLRPVATTSGGHAL
CLDYNFNGVSGYVGIRRSLPIEFPDNYRIGFALRGESPSNDLQVKLIDASGDNVWWINRP
GFTFPKTWTTFNYRKRNIEKAWGPGADKQLRSSADVEFTIYNKVGGKGSVCFDRLTLTPL
PPEDTSPLKAEAITDTAPALEQRLADGKPDTFWLSGAVKQQTVTLDLGKVREFGGAIVQW
VPGLQASQYVVRSSSDGRSWRDLRTVIAGAGGTDWLALPDTEARYLRFDLKDGPNWRYGI
KEVQLQPLAFAATPNDFIKSLATQSPRGNFPRGFSGEQPYWTILGLDGGTEQGLIGEDGA
VEVGKGGFSVEPFVSVGGKLLRWADVSSEQSLQDDYLPIPSVDWHHDLMNLRITGFVQGT
PDQAQLVARYQLRNTGKDAREFTLALAVRPFQVNPPAQFLNTLGGISRIEQLSVDGAQVN
VNGKPRVFAAQRPDAAFASAFDSGMDVTHLTAATLPTTTQVKDETGLASGVLVYRWKLEP
GQSREVALVIPQTGSAQLPAGFDADKAQQQVAQQWRGKLDRVRISVPAEGKPVVDTLRTA
LAHMLISRIGPRLQPGTRSYSRSWIRDGAMISEGLLRLGREDVVRDYVDWFAPYQFADGM
VPCCVDDRGSDPVPENDSHGELIFNVAEYYRYTGDKPFLEKMWPHVLGAYDYMEKLRASE
RTEDNFMRNPAFYGMMPVSISHEGYSAKPVHSYWDNFWALRGYKDAVMLAGALDKPDEVA
RFSTARDEFSGDLTASLAAAVRQHQLDFLPGSAELGDFDATSTTIALAPGGEQQRLPPEL
LNNTFERYWKEFTDRRDSKREWKDYTPYEWRNVAAFVRLGWRDRAWDATAFFFKDRAPQP
WNQWAEVVSRTPRTPFFVGDLPHAWVASDFVRSVLDMFAYGREADASLVIAAGTPTRWFD
GKGIGIAELRTPYGRLNYTLQRTDKQLVLQLQPGLILPPGGVVFAWPYQGEPGKASINGE
AVQWENGELRIQQLPASVQIDVPSAVRRAERAAQ