Protein Info for Xcc-8004.2363.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: OmpA-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 992 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 39 to 113 (75 residues), 45.5 bits, see alignment 8.3e-16 PF00593: TonB_dep_Rec" amino acids 363 to 895 (533 residues), 48.3 bits, see alignment E=1.5e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_1910)

Predicted SEED Role

"OmpA-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X8P6 at UniProt or InterPro

Protein Sequence (992 amino acids)

>Xcc-8004.2363.1 OmpA-related protein (Xanthomonas campestris pv. campestris strain 8004)
MSHHHPHSASPARKLLSCALASCLLLGAAPAFAQSTAATIRGQVTVDSAPAAQAQVTATN
LATGLTRTVQVTNGGYSVGGLPPGSYRLDVTANGQTTSQNVTVQVGQTATLNLGVGGEPA
TAAGGNATTLDAVQVKAPPVLVETRTSENATYISNVQIQNLPRATRNFLELADTVPNVQF
TRDANGTTKVRSGATSAEGTNVYIDGVSQKNYVLTGGVSGQDSSRGNPFPQSAIGEYKVI
TSNYKAEFDQVSGAAIVASSKSGTNDFHGSFFWDTSNDGWREESPLEKKAGVRDDFEETQ
YGATFSGPILKDKAHFFIAYEAKEYTTPNVVIPGSIYSDRIDQLPAQLQPLVATYSTPFK
EDLYFGKIDWTIGDNNLFELTGKYRKEDELNDVGQTSTFEHGSVNGQEEKRANLRWQYSG
ANFLNEANLSYESAFWNQAPLNDGTGYVLSYTPNRGNETDVLAAGAGSSFQRKGQKGWTF
QDDLTLNSLEWHGAHTVKMGVKFKSIDLDSTQFNPANPQYYYNILSDVETPYRVRFGAPL
TEGGGSVVSKNKQYGIYLQDDWEVNEHWTLNLGVRYDYEESPAFLDFVTPSDVAGALQNW
PNLQNANYNINNFISTGNNRKAFKNAWQPRLGASYDLFGDQAHVIYGGAGRAYDRNIFDY
LALEQLNNSFNSYSYYFTSANNPACLGDPCTAWNPAYSTQEGLNTLTANSAGGGGREVYL
IDNNIKTPYSDQFSIGMRNMVPLWGQDWFTDVTLSRIESHDGFAFVRGNRLPDGSFFLPG
TTSGSPTDGPDGYSAIVLGTNGVETRNNQLALQIEKPYDEESGWGLTVAYTFSDAKENRQ
FGEHYALDRERVEDYGWREAGGIAKNRLVVTGIYELPYEIKLSGKLSLASQTARYGQNCL
AGNDQCYIVQFKPDGTLGYKEFSIAANKEWDTGGGVKFNVRADILNVFNWVNYANFNGET
GTLGDLNTAYGTPTGVLASPMRTFRLAFGLNW