Protein Info for Xcc-8004.2307.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: C4-type zinc finger protein, DksA/TraR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 TIGR02420: RNA polymerase-binding protein DksA" amino acids 45 to 154 (110 residues), 145 bits, see alignment E=5.6e-47 PF21157: DksA_CC" amino acids 49 to 119 (71 residues), 92 bits, see alignment E=2.3e-30 PF01258: zf-dskA_traR" amino acids 122 to 154 (33 residues), 33.2 bits, see alignment 4.1e-12

Best Hits

KEGG orthology group: K06204, DnaK suppressor protein (inferred from 100% identity to xcb:XC_1861)

Predicted SEED Role

"C4-type zinc finger protein, DksA/TraR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X6V4 at UniProt or InterPro

Protein Sequence (164 amino acids)

>Xcc-8004.2307.1 C4-type zinc finger protein, DksA/TraR family (Xanthomonas campestris pv. campestris strain 8004)
VPVTSKPSGSTPKAKYKVVDYKTDETTGRPILPQGYKPSADEEYMSKLQQEYFRQRLQRW
RNEMVEESKQTIENLREEVRDIGDEAERATRETENSLELRARDRARKLISKIDSTLKRLE
DGDYGYCVDTGEEIGLDRLEARLTAERTIDAQERWEHLQKQQGD